Gene
| Gene Model ID | habu1_s2370_g08621 |
|---|---|
| Locus | habu1_scaffold2370 : 433196 ... 439230 : + |
| To GenomeBrowser | habu1_scaffold2370:433196..439230 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| gamma-secretase subunit aph-1a isoform x1 | GO:0012505 GO:0016021 GO:0033619 GO:0043231 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08621.t1 | 1 | 1 | Aph-1 | 4 | 277 | 0.0 | 296.2 | 0.0 | 0.0 | 295.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08621.t1 | gi|327288014|ref|XP_003228723.1| | PREDICTED: gamma-secretase subunit APH-1A [Anolis carolinensis] | 0.0 |
| habu1_s2370_g08621.t1 | gi|530603961|ref|XP_005293724.1| | PREDICTED: gamma-secretase subunit APH-1A isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2370_g08621.t1 | gi|504153879|ref|XP_004588905.1| | PREDICTED: gamma-secretase subunit APH-1A isoform X1 [Ochotona princeps] | 0.0 |
| habu1_s2370_g08621.t1 | gi|532091033|ref|XP_005331207.1| | PREDICTED: gamma-secretase subunit APH-1A isoform X2 [Ictidomys tridecemlineatus] | 0.0 |
| habu1_s2370_g08621.t1 | gi|507567099|ref|XP_004667187.1| | PREDICTED: gamma-secretase subunit APH-1A isoform X1 [Jaculus jaculus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.5 |
| Venom grand-1 | 19.3 |
| Pit, infrared sensing | 11.4 |
| Nose | 6.3 |
| Brain-1 | 5.0 |
| Eye | 8.0 |
| fetal fibroblast | 3.3 |
| venom gland-2 | 8.0 |
| Brain-2 | 3.4 |
| Spleen | 9.1 |
| Lung | 21.5 |
| Liver | 37.6 |
| Kidney | 17.2 |
| Pancreas | 20.3 |
| Small intestine | 14.5 |
| Large intestine | 12.6 |
| Stomach | 17.2 |
| heart | 5.9 |
| ovary | 2.9 |
| cheek muscle | 6.1 |
Transcript
| Transcript ID | habu1_s2370_g08621.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08621.t1 gtcctcccccgggggactagctcccagggtgcccgtgcggggagctccgcccaggggcgtcccagtcctaccctcactcc tccctcctcctcctcctcctccctcctcctgccgaggcgcgatgggggcgtcggtgtttttcggctgctccttcatcgcc ttcgggccggcgctggcgctctgccttctgactgtggccggggaccccctgcgcgtcattatcctcgtggcaggggcctt cttttggttggtctcccttctcttggcttccctgatctggatcatttccattcacctgagtgaccaggagaacaagcggc tgcagcatctcctgctgatgtttggggcaacggtgtctgtcttgctgcaggaagccttccgttttgcgcacttcaagctc ctcaaagattcccaggaactgaagtctgagggcagcagtaaagagtgggaagccttttactccctcaatgagttccccgc atcctctgcatcctgttttaggaaagctgatgaagggcttgtaaccataagtgaagatgggcgatcacccatttcgacca aacaaatggcctatgtgtcaggcctctcctttggaatcatcagcggcgtcttctccgccattaacatccttgcagattcc attggtcccggcacagttggcatccacggggattcgccctattacttcatcgcttcagctttcctgaccatggccgtggt tttcttacacacgttctggggggtcattttctttgatgcctgtgagacgaggcgctactggaagctggccctggtggttg tcagccacttggtgatatctgggctgacattcctgaacccatactatgaagcaagccttattcccatcttcctgatcacc gtctcaacaggggtgtgggcctttttcacagctggcggttcgctgcgcaacatcctggcctgcctctcctgcagagagaa agagaacggccgcgttatggtgtattctgagctgcagctccctacggaggactgagcccctgccccttggatcctggcag tcggatgcttcctagaaaagatgagataatctccacaccaccgggcatggctcttcatctgggacaagggctccagagct gatcagatggtcagagctcctgcttggccctgggaaggcagaagacgctccttggcccaaaagatggcttggaggggcag gaaggctaactctgtgccttggctggtggctgggaaccctaaccccttcctccaactctgcttgttttcctttgcttcta tttttgccctggaagatggacactcgggttctcctggagagctgagcaagccccagtcccttaccacgaacgactcccag accgcgttccctagtggattccgctggattcgtaacacggccggaggttttgtgggcgatggcggagctcctcatgtgac aacaaaatccctttgttctcagcctgaacttttgcttcatccactggggaatccggtgcatggggcactggacctggtga ggcgcaagcgcaccatctgctggctaggaggtgctgctgtatctgtagggacacccaaaggctctttcttgctctatttt ttatttttatatatatatatatatatatatatatataaagtcccagtcctactttctttcttttaatgttgagccctaaa tccttttatgagttggcccgtagtgccgttaataaaaagaaatgatctggtaactttt |
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Protein
| Protein ID | habu1_s2370_g08621.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08621.t1 MGASVFFGCSFIAFGPALALCLLTVAGDPLRVIILVAGAFFWLVSLLLASLIWIISIHLSDQENKRLQHLLLMFGATVSV LLQEAFRFAHFKLLKDSQELKSEGSSKEWEAFYSLNEFPASSASCFRKADEGLVTISEDGRSPISTKQMAYVSGLSFGII SGVFSAINILADSIGPGTVGIHGDSPYYFIASAFLTMAVVFLHTFWGVIFFDACETRRYWKLALVVVSHLVISGLTFLNP YYEASLIPIFLITVSTGVWAFFTAGGSLRNILACLSCREKENGRVMVYSELQLPTED |
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