Gene
| Gene Model ID | habu1_s2370_g08624 |
|---|---|
| Locus | habu1_scaffold2370 : 455256 ... 468884 : + |
| To GenomeBrowser | habu1_scaffold2370:455256..468884 |
| Genes list of scaffold | habu1_scaffold2370 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u4 u6 small nuclear ribonucleoprotein prp3 | GO:0000398 GO:0019013 GO:0046540 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2370_g08624.t1 | 1 | 1 | Ribosomal_S21 | 13 | 59 | 1.6e-13 | 49.8 | 4.3e-17 | 1.6e-13 | 49.8 |
| habu1_s2370_g08624.t1 | 1 | 1 | PRP3 | 292 | 394 | 1.4e-19 | 70.4 | 7.0e-23 | 2.6e-19 | 69.5 |
| habu1_s2370_g08624.t1 | 1 | 1 | DUF1115 | 419 | 550 | 1.6e-41 | 141.0 | 9.80909e-45 | 3.80004e-41 | 139.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2370_g08624.t1 | gi|602677934|ref|XP_007444411.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2370_g08624.t1 | gi|602677932|ref|XP_007444410.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2370_g08624.t1 | gi|700428043|ref|XP_009952631.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3, partial [Leptosomus discolor] | 0.0 |
| habu1_s2370_g08624.t1 | gi|696977133|ref|XP_009557849.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3, partial [Cuculus canorus] | 0.0 |
| habu1_s2370_g08624.t1 | gi|698417251|ref|XP_009812864.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3, partial [Gavia stellata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.6 |
| Venom grand-1 | 20.5 |
| Pit, infrared sensing | 13.0 |
| Nose | 12.0 |
| Brain-1 | 7.6 |
| Eye | 14.7 |
| fetal fibroblast | 18.6 |
| venom gland-2 | 18.5 |
| Brain-2 | 7.7 |
| Spleen | 13.4 |
| Lung | 19.8 |
| Liver | 21.2 |
| Kidney | 18.4 |
| Pancreas | 22.8 |
| Small intestine | 18.0 |
| Large intestine | 13.7 |
| Stomach | 15.3 |
| heart | 15.8 |
| ovary | 33.7 |
| cheek muscle | 35.1 |
Transcript
| Transcript ID | habu1_s2370_g08624.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08624.t1 tgcgaccttccgggctccgggcgggcacttctgcccaaatcgctgcccggcccttctagcggtccgcggggtgaagatgg cgcaccacgccaagttcctcgcccggaccgtgatggtcccgggcggggacgtggagctggcctaccgcgtcctcaccaga gtcctcactatggatggaatcatcgatcacgtcaagcggaggcggtattacgagaagccatgccagaagaggcggcggga ggcctacgaagcataccctgatttgtataaagcttacctcttctcagccgtgtttttactacaggatgtgtttggggatg actcggagatttctaaggagtcctcgggggtcaagaaacggcgcatcccccgctttgaggaggtggaagaagagcccgag gtcatccctggcccacccaccgaaagcccagggatgctgaccaagcttcagatcaagcaaatgatggaggccgcaacacg gcagattgaggagaggaagaaacagctgagtttcatcagctccccggctcctcagcctaaagctccggcagccactcctc ccgagcgcctcccgatcgggaacaccatccagccctcgcaggcagccactttcatgaacgacgccattgagaaggcccgg aaagcagcggagttgcaagcccgaatccaggcccaactggcactgaaacctgggctgattggcaacaccaacatggtggg actggccaacctgcatgccatgggcatcgccccaccgaaggtggagctgaaagaccagagcaaaccgacgccgctgattc tggatgagcaaggtcgcacggtggacgccaccggtaaggaggtggagctgacccaccgcatgccgacgctcaaggcgaac atccgggctgtgaagagggagcagttcaagcagcagctgaaggagaagccctcggaggacatggagtccaacacttattt tgacccccgggtccccgtcaccccagctcagcggccaaagaggactttccggtttcatgacaagggcaagtttgaaaaaa tagcccaacggctgcggacgaaggcccagttagaaaagctccaggcagagatctcacaagctgccaagaagacgggaatt cacacctcgaccaaattggcccttatcactcccaaaaaggaggtgaaggagggggacattcctgaggtggagtggtggga ctcctacatcatccccaacggcatggacgtagctcacgaggaagcaaacgccgcccgaaagctgaccgtggaacagagga aagcgaaaaaggtgaaaaagcttaaggaggacatttcgcagggcgttcacatagccgtttacagagtccggaatctaggt aacccagcaaagaaattcaaaattgaagctaacgccagccagttgtacttaaccggagttgtggttttacacaaagatgt caatgtggtggtggtagaaggaggtcccaaagcacagaagaaatttaagcggctcatgttacatcgaataaaatgggacg agcagacgtcaaacacaaaaggagatgatgatgaggaatctgatgaggaatctgtgaaaaaaaccaacaaatgttccctg gtttgggagggcacggcaaaggagcggagctttggcgagatcaaattcaagcagtgtcctaccgaaaacatggcacggga gcattttaagaaacacggcactgagcattattgggatctggctctgagcgagtccgtcctagaacccacagactgacggc cttttctggagcccctcctcacatttctgggtgtttgacacaaagagcaagaactgagcagaaacnnnnnnnncccccaa atcctcattcccacaaattcctcacagtacaatgcatacaattaaaggaaatatttttcagatccaaa |
|
Protein
| Protein ID | habu1_s2370_g08624.t1 |
|---|---|
| Definition | - |
>habu1_s2370_g08624.t1 MAHHAKFLARTVMVPGGDVELAYRVLTRVLTMDGIIDHVKRRRYYEKPCQKRRREAYEAYPDLYKAYLFSAVFLLQDVFG DDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPTESPGMLTKLQIKQMMEAATRQIEERKKQLSFISSPAPQPKAPAAT PPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNTNMVGLANLHAMGIAPPKVELKDQSKPTPL ILDEQGRTVDATGKEVELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTYFDPRVPVTPAQRPKRTFRFHDKGKFE KIAQRLRTKAQLEKLQAEISQAAKKTGIHTSTKLALITPKKEVKEGDIPEVEWWDSYIIPNGMDVAHEEANAARKLTVEQ RKAKKVKKLKEDISQGVHIAVYRVRNLGNPAKKFKIEANASQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKW DEQTSNTKGDDDEESDEESVKKTNKCSLVWEGTAKERSFGEIKFKQCPTENMAREHFKKHGTEHYWDLALSESVLEPTD |
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