Gene
| Gene Model ID | habu1_s2388_g08674 |
|---|---|
| Locus | habu1_scaffold2388 : 222876 ... 240089 : + |
| To GenomeBrowser | habu1_scaffold2388:222876..240089 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| complement c1q tumor necrosis factor-related protein 2 | GO:0005515 GO:0005576 GO:0010604 GO:0031325 GO:0044260 GO:0044763 GO:0055114 GO:0070206 GO:0080090 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08674.t1 | 2 | 1 | Collagen | 112 | 166 | 3.4e-16 | 58.5 | 4.1e-13 | 3.1e-09 | 36.2 |
| habu1_s2388_g08674.t1 | 2 | 2 | Collagen | 154 | 212 | 3.4e-16 | 58.5 | 3.1e-12 | 2.3e-08 | 33.4 |
| habu1_s2388_g08674.t1 | 1 | 1 | C1q | 223 | 347 | 5.2e-37 | 126.6 | 9.19994e-41 | 6.8e-37 | 126.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2388_g08674.t1 | gi|543254233|ref|XP_005418992.1| | PREDICTED: LOW QUALITY PROTEIN: complement C1q tumor necrosis factor-related protein 2 [Geospiza fortis] | 0.0 |
| habu1_s2388_g08674.t1 | gi|542169118|ref|XP_005493115.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 2 [Zonotrichia albicollis] | 0.0 |
| habu1_s2388_g08674.t1 | gi|602628205|ref|XP_007421040.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 2 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2388_g08674.t1 | gi|543360453|ref|XP_005523853.1| | PREDICTED: LOW QUALITY PROTEIN: complement C1q tumor necrosis factor-related protein 2 [Pseudopodoces humilis] | 0.0 |
| habu1_s2388_g08674.t1 | gi|543725145|ref|XP_005503709.1| | PREDICTED: LOW QUALITY PROTEIN: complement C1q tumor necrosis factor-related protein 2 [Columba livia] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.1 |
| Venom grand-1 | 1.1 |
| Pit, infrared sensing | 1.0 |
| Nose | 0.2 |
| Brain-1 | 0.1 |
| Eye | 0.4 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.1 |
| Brain-2 | 0.1 |
| Spleen | 0.3 |
| Lung | 2.0 |
| Liver | 0.0 |
| Kidney | 0.5 |
| Pancreas | 0.0 |
| Small intestine | 0.3 |
| Large intestine | 1.3 |
| Stomach | 0.6 |
| heart | 5.8 |
| ovary | 1.3 |
| cheek muscle | 8.3 |
Transcript
| Transcript ID | habu1_s2388_g08674.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08674.t1 agtcgaggactacccaaccggtcgtaagtcgaggactttccctgcccgggagcgccgcgcatgcgtggttccgccccctg cgccagccgaggcgtagctggcaagtggcagagacggagcaggccgaccaccagctggcccagctcaagggagtgctttg tggcagtaactcccaacaaaagtggacaaggtcctgctgaaggacatctgtttaagattcagcagatttcgactggatgt caggcgctgcttgaagaaagtggtgctggtatcaccatgatcttcctttttctggttgcctggattactccctgtatagc taatcaatttctcagtagctttgcaagagcagaaattcagaaaaatcccaggcaagtaatctgcagcgtgctaggaccac aaggccctccaggtgctcccggagctcggggtgctcctgggaatataggaaggatgggttttccaggaaaagatggacga gatggagaagatggacagaaaggacagccaggagaggaaggtaaccaaggcaggatgggaaatccaggccagccaggatc aaaaggaaaaccaggagccattggcaaagctggtctccgtggtctaaaaggccccaagggcccccctggaaaaagcgggg gagctggaaagaaagggccccgaggagctcaaggagaccttggaatgtctggcccttgcaaatgcaaggccaagaaagcc agatcagctttttctgttgctgtgactaaaagttacccaaaagagagactgcccatcaaatttgacagggtcctcatgaa tgaaggtggaaattacaacacttccagtgggaaatttatatgcaacatccccggcgtctattatttcacttacgatatca cactggccaataaacacttggctattgggctggtgtacaatggtcagtacaggataaagacatttgatgccaacaccggg aaccatgacattgcttctggatcgacaatcctttccctaaagcagaaggatgaagtgtggctgcagatatattattcaga acagaatgggctgttctatgatccttactggacagatagcgtttttactggctttctgatatatgctgatcaggattacc tcaatgaaatctctctaatgcatcagtacgtccctttggagattgcagaattctacaacaagcatttaaattcaaaatag tccttgacttatgacaacagttgggaaccgaatttccactgctaagcaaagcagttgttaagtaagttgtgcctgatttt atgacattttttgccctggttaagtgaatcattgcatttgttatgggaacccggattcccccattgactttgctctttgg aagccctccggaaaggttgcaactggcaatcacttgaccccggaacgctgcaactgtttaaaggacatgccatgtaccca aattctgactgtgtgactatggagatgctgtgatagtaataagagtgaagaccagtcataagtcatttcttgcactactg ttgtaactttgaatggttgctaaatgaatggttgcaaatcgaggactgcctgtatttctcagcaataacctatcaatttt atcctttcttctgcccattgattggcaaacaaacaagattttgccaaataaaggacaacaacagatacatagat |
|
Protein
| Protein ID | habu1_s2388_g08674.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08674.t1 MRGSAPCASRGVAGKWQRRSRPTTSWPSSRECFVAVTPNKSGQGPAEGHLFKIQQISTGCQALLEESGAGITMIFLFLVA WITPCIANQFLSSFARAEIQKNPRQVICSVLGPQGPPGAPGARGAPGNIGRMGFPGKDGRDGEDGQKGQPGEEGNQGRMG NPGQPGSKGKPGAIGKAGLRGLKGPKGPPGKSGGAGKKGPRGAQGDLGMSGPCKCKAKKARSAFSVAVTKSYPKERLPIK FDRVLMNEGGNYNTSSGKFICNIPGVYYFTYDITLANKHLAIGLVYNGQYRIKTFDANTGNHDIASGSTILSLKQKDEVW LQIYYSEQNGLFYDPYWTDSVFTGFLIYADQDYLNEISLMHQYVPLEIAEFYNKHLNSK |
|