Gene
| Gene Model ID | habu1_s2388_g08680 |
|---|---|
| Locus | habu1_scaffold2388 : 374243 ... 389525 : - |
| To GenomeBrowser | habu1_scaffold2388:374243..389525 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribonuclease h2 subunit a | EC:3.1.26.4 GO:0003723 GO:0004523 GO:0006298 GO:0006401 GO:0032299 GO:0051252 GO:0090502 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08680.t3 | 1 | 1 | RNase_HII | 31 | 241 | 0.0 | 176.6 | 0.0 | 0.0 | 176.3 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.7 |
| Venom grand-1 | 2.5 |
| Pit, infrared sensing | 4.6 |
| Nose | 3.7 |
| Brain-1 | 1.6 |
| Eye | 2.4 |
| fetal fibroblast | 14.1 |
| venom gland-2 | 2.0 |
| Brain-2 | 1.8 |
| Spleen | 1.6 |
| Lung | 2.1 |
| Liver | 0.4 |
| Kidney | 1.2 |
| Pancreas | 0.9 |
| Small intestine | 1.3 |
| Large intestine | 2.4 |
| Stomach | 1.2 |
| heart | 2.4 |
| ovary | 13.2 |
| cheek muscle | 4.0 |
Transcript
| Transcript ID | habu1_s2388_g08680.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08680.t1 cttgtgtttgacatgtctggtttacctggttacttaaaggaccgtctctccctgattcagtaagagaggcacgttcttgg tattatcagctaaggagtgtcagctggtgggacccagaaagacactcttttctgcagtggtgccttactctttggaacac tgttccctctgagattagattagctctacccttgctgaccttccacaaagccttaaaaacttgatttagtgcctgagccc ggtgtcctgggtgtgtgacaaagtttgtctccttgctacattagtgatttttttatgatacttggatgctatgtctttga ttttttgcagtatgtattttacttaatttattttcagccatctagagccgcctacgtgaggtggatgctacataaatcta ataaataaaatcattccacccatccacacataaatatataaaaatggctgaagtcttcatcaaaatctatgggagaacac tgagatttggtaattttgcaaaatgtatgcagcagctgggaagacttctgatctctgctttactaaaagacaacgtctca ttgtagctttcccataacatggctgttgaccatgctgactaagggataataaaaactgaagactaattcacctgcaggag cttagactggggaagaaagctgtatttaaggtaaagccaaatttatctttctgctaaattgtttgaaaactactacacaa tcctcactgtctcactcagacctatcattgcaccctaaagagaaactaggcacaatgaaccaatcttaagttgatcatct tttccagagcactactgctttatttttctatgtccatttcatctatcactcaccttcaccatgctgatctgtgaattgga aggcttgaaccaggcgcagtgtctcatccacagaacgtcccacggaaacagactttgaggagaatatttggggcatatgg atgatataacttaaatagatcttcaacctatatagaagataaacctaaactgcttccaggaaatcaacttgctaaaatac agacaaaactgagtcccatggtctatggaatctgtttctgtcctgtgtctcggcagggagacctagaaacattgaaagta gcagattctaaaactctgacagaagctcaacgggaagaactctttgagaaaatagatgcagctaaggggtttgtaggatg ggccctacacatcctctcccctaatttcatctcaactagcatgcagaggcggacaaagtacaacttgaatgcattgtccc atgatacagccattggcctaatccagcatgcactagattctggagtgcaagttgcagaggtttatgtagatacagtggga ccagcagagaaataccaagaaaagctaaagcagcagtttcctgagctggaggttacagtgaaggccaaagcagactctct tttccctactgtaagcgcagccagcatctgtgccaaggtagcaagggatcggattgtaaagaattggaaattcttggaaa acctggaagaaacagaatcggattatggctctggctatcccaatgatcccaagactaaagaatggctcgctgaaaacctg gaaccaatctttggcttcccacagtttgtacgatttagctggagcacagctcagctcattctggagagcaaagctgtgcc tgttcattgggatgatcctgaagatgacccatcccagcagagtacaaagtccctgctgagctactttacccggaaagttt cccccgtcaagcatacaccccatcgcttcttttatgagcgcaaacttgagacagtgaccagcctgtagtgggtggcaggt ggtttttgtcttgttcaaaatcatcttactttggcttgacagaaaactttcctgatgtaacgtctagtttttaatgggca atcacaaatcgtttgagccatagctacaaaacagtgtgaaacccaaaggttcaactgaaagatacaaaatgaaacagaaa gaatctgataaatgttcttcctggaggccctcctgcccttgtgactaattcctttttaattaataaattatctaaaactg atagcgagactttttgtttgatgtaaattaataggtactgatgcctaataaaagctaatcgaatataattgaga |
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| Transcript ID | habu1_s2388_g08680.t2 |
| Definition | - |
>habu1_s2388_g08680.t2 aacgggacaattcggtgaattgtttgttggcatcggtggtgcctcctatttgtcggactgagccctgtagtttgggcatc gatgaggcaggcaggggaccagtattaggtatggattcaaatatataagggaaaactggaatctttggagtaccggcccc gaagcatcgtccagggtgaatcttgtagctccctggattgtatagatttccaggtcccatggtctatggaatctgtttct gtcctgtgtctcggcagggagacctagaaacattgaaagtagcagattctaaaactctgacagaagctcaacgggaagaa ctctttgagaaaatagatgcagctaaggggtttgtaggatgggccctacacatcctctcccctaatttcatctcaactag catgcagaggcggacaaagtacaacttgaatgcattgtcccatgatacagccattggcctaatccagcatgcactagatt ctggagtgcaagttgcagaggtttatgtagatacagtgggaccagcagagaaataccaagaaaagctaaagcagcagttt cctgagctggaggttacagtgaaggccaaagcagactctcttttccctactgtaagcgcagccagcatctgtgccaaggt agcaagggatcggattgtaaagaattggaaattcttggaaaacctggaagaaacagaatcggattatggctctggctatc ccaatgatcccaagactaaagaatggctcgctgaaaacctggaaccaatctttggcttcccacagtttgtacgatttagc tggagcacagctcagctcattctggagagcaaagctgtgcctgttcattgggatgatcctgaagatgacccatcccagca gagtacaaagtccctgctgagctactttacccggaaagtttcccccgtcaagcatacaccccatcgcttcttttatgagc gcaaacttgagacagtgaccagcctgtagtgggtggcaggtggtttttgtcttgttcaaaatcatcttactttggcttga cagaaaactttcctgatgtaacgtctagtttttaatgggcaatcacaaatcgtttgagccatagctacaaaacagtgtga aacccaaaggttcaactgaaagatacaaaatgaaacagaaagaatctgataaatgttcttcctggaggccctcctgccct tgtgactaattcctttttaattaataaattatctaaaactgatagcgagactttttgtttgatgtaaattaataggtact gatgcctaataaaagctaatcgaatataattgaga |
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| Transcript ID | habu1_s2388_g08680.t3 |
| Definition | - |
>habu1_s2388_g08680.t3 aggagggtttttggagcgaggtggtcggcgtgtgattctccatgctttgctggaaactcccagcattggttcggattttt ttctgccctccgttcgggccttttgctgatagattaccactagcgtttcgaccaacaatggaactgagtagcgaatcatc tcgtctcacaaactacacttcccagaagaccttgcactctttgcacttccctttcttatgtcctcggccgggtgctttca gcgcgcgcgcgaaaatggatctcggcgaattcgaacgggacaattcggtgaattgtttgttggcatcggtggtgcctcct atttgtcggactgagccctgtagtttgggcatcgatgaggcaggcaggggaccagtattaggtcccatggtctatggaat ctgtttctgtcctgtgtctcggcagggagacctagaaacattgaaagtagcagattctaaaactctgacagaagctcaac gggaagaactctttgagaaaatagatgcagctaaggggtttgtaggatgggccctacacatcctctcccctaatttcatc tcaactagcatgcagaggcggacaaagtacaacttgaatgcattgtcccatgatacagccattggcctaatccagcatgc actagattctggagtgcaagttgcagaggtttatgtagatacagtgggaccagcagagaaataccaagaaaagctaaagc agcagtttcctgagctggaggttacagtgaaggccaaagcagactctcttttccctactgtaagcgcagccagcatctgt gccaaggtagcaagggatcggattgtaaagaattggaaattcttggaaaacctggaagaaacagaatcggattatggctc tggctatcccaatgatcccaagactaaagaatggctcgctgaaaacctggaaccaatctttggcttcccacagtttgtac gatttagctggagcacagctcagctcattctggagagcaaagctgtgcctgttcattgggatgatcctgaagatgaccca tcccagcagagtacaaagtccctgctgagctactttacccggaaagtttcccccgtcaagcatacaccccatcgcttctt ttatgagcgcaaacttgagacagtgaccagcctgtagtgggtggcaggtggtttttgtcttgttcaaaatcatcttactt tggcttgacagaaaactttcctgatgtaacgtctagtttttaatgggcaatcacaaatcgtttgagccatagctacaaaa cagtgtgaaacccaaaggttcaactgaaagatacaaaatgaaacagaaagaatctgataaatgttcttcctggaggccct cctgcccttgtgactaattcctttttaattaataaattatctaaaactgatagcgagactttttgtttgatgtaaattaa taggtactgatgcctaataaaagctaatcgaatataattgaga |
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Protein
| Protein ID | habu1_s2388_g08680.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08680.t1 MVYGICFCPVSRQGDLETLKVADSKTLTEAQREELFEKIDAAKGFVGWALHILSPNFISTSMQRRTKYNLNALSHDTAIG LIQHALDSGVQVAEVYVDTVGPAEKYQEKLKQQFPELEVTVKAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEETE SDYGSGYPNDPKTKEWLAENLEPIFGFPQFVRFSWSTAQLILESKAVPVHWDDPEDDPSQQSTKSLLSYFTRKVSPVKHT PHRFFYERKLETVTSL |
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| Protein ID | habu1_s2388_g08680.t2 |
| Definition | - |
>habu1_s2388_g08680.t2 MVYGICFCPVSRQGDLETLKVADSKTLTEAQREELFEKIDAAKGFVGWALHILSPNFISTSMQRRTKYNLNALSHDTAIG LIQHALDSGVQVAEVYVDTVGPAEKYQEKLKQQFPELEVTVKAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEETE SDYGSGYPNDPKTKEWLAENLEPIFGFPQFVRFSWSTAQLILESKAVPVHWDDPEDDPSQQSTKSLLSYFTRKVSPVKHT PHRFFYERKLETVTSL |
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| Protein ID | habu1_s2388_g08680.t3 |
| Definition | - |
>habu1_s2388_g08680.t3 MDLGEFERDNSVNCLLASVVPPICRTEPCSLGIDEAGRGPVLGPMVYGICFCPVSRQGDLETLKVADSKTLTEAQREELF EKIDAAKGFVGWALHILSPNFISTSMQRRTKYNLNALSHDTAIGLIQHALDSGVQVAEVYVDTVGPAEKYQEKLKQQFPE LEVTVKAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEETESDYGSGYPNDPKTKEWLAENLEPIFGFPQFVRFSWS TAQLILESKAVPVHWDDPEDDPSQQSTKSLLSYFTRKVSPVKHTPHRFFYERKLETVTSL |
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