Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s2388_g08685
Locus habu1_scaffold2388 : 515808 ... 519524 : +
To GenomeBrowser habu1_scaffold2388:515808..519524
Genes list of scaffold habu1_scaffold2388

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s2388_g08685.t1 gi|602628183|ref|XP_007421029.1| PREDICTED: uncharacterized protein C19orf43 homolog [Python bivittatus] 0.0
habu1_s2388_g08685.t1 gi|530648239|ref|XP_005310693.1| PREDICTED: uncharacterized protein C19orf43 homolog [Chrysemys picta bellii] 1.99965e-42
habu1_s2388_g08685.t1 gi|733928091|ref|XP_010724948.1| PREDICTED: uncharacterized protein C19orf43 homolog [Meleagris gallopavo] 3.0e-38
habu1_s2388_g08685.t1 gi|612034083|ref|XP_007497329.1| PREDICTED: uncharacterized protein C19orf43 homolog [Monodelphis domestica] 4.0e-37
habu1_s2388_g08685.t1 gi|507965720|ref|XP_004688776.1| 1.0e-36

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 17.5
Venom grand-1 26.8
Pit, infrared sensing 22.1
Nose 23.6
Brain-1 19.5
Eye 24.3
fetal fibroblast 27.6
venom gland-2 41.5
Brain-2 20.1
Spleen 20.8
Lung 25.8
Liver 23.2
Kidney 26.0
Pancreas 27.7
Small intestine 22.4
Large intestine 19.8
Stomach 23.3
heart 25.0
ovary 28.7
cheek muscle 34.4

Transcript
Transcript IDhabu1_s2388_g08685.t1
Definition-
>habu1_s2388_g08685.t1
caacgacggttcctttcttgagctgttcaagcggcgcatggaggaagccgctgggtcgggaggcaagagtggatcagaaa
cggcggtcgccgggcccgagaaacagaaagagatcgaaccgcggccagagccgcccggggaccaagagccaccggggaag
aagcggagcgggagcgccctcagcttcgtgggcaagcggagagggggcagcaagctagccctgaagacaggagtggtagc
caagaaacaaaagacagaggaggaggttttgacaaataaaggagatgcatgggcgaaatatatggctgaagtgaaaaagt
acaaagcccaccagtgcagtgatgatgataaaacccggcctttagtgaaataacttttatctccagcctggactgtctgt
gatgtacataattatttaaaatatcaaaggattagtgctgtcccacaagactgaatgctgccatggcagcaggagacttg
ccatacttttatatttgaaaatttagagcctccttcactgattcatttattgttttccccttcttctgagaactaagaac
tttgacttaattgccagatttttaatttgtaacaccctgtctctaaatagtggaattgatctgacatttctttcccagaa
tcatcaggcaaaaacatacctttgctgataaactttcagcattgagtctttgcttaacattaacacctgaactttctact
ataggacatgctaagaagttctctttatcaaattcagtacctcttactgctgaagataaatttaaaatgtggttgctaat
ag

Protein
Protein IDhabu1_s2388_g08685.t1
Definition-
>habu1_s2388_g08685.t1
MEEAAGSGGKSGSETAVAGPEKQKEIEPRPEPPGDQEPPGKKRSGSALSFVGKRRGGSKLALKTGVVAKKQKTEEEVLTN
KGDAWAKYMAEVKKYKAHQCSDDDKTRPLVK

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