Gene
| Gene Model ID | habu1_s2388_g08686 |
|---|---|
| Locus | habu1_scaffold2388 : 524936 ... 536077 : - |
| To GenomeBrowser | habu1_scaffold2388:524936..536077 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ring finger protein 11-like | GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08686.t3 | 1 | 1 | zf-C3HC4_3 | 98 | 145 | 7.5e-07 | 28.7 | 9.2e-10 | 1.1e-06 | 28.1 |
| habu1_s2388_g08686.t3 | 1 | 1 | zf-RING_2 | 99 | 140 | 7.0e-13 | 48.1 | 8.5e-16 | 1.1e-12 | 47.6 |
| habu1_s2388_g08686.t3 | 1 | 1 | zf-RING_5 | 99 | 140 | 1.9e-06 | 27.5 | 2.4e-09 | 3.0e-06 | 26.8 |
| habu1_s2388_g08686.t3 | 1 | 1 | zf-C3HC4_2 | 100 | 140 | 4.9e-08 | 32.8 | 6.0e-11 | 7.4e-08 | 32.2 |
| habu1_s2388_g08686.t3 | 1 | 1 | zf-C3HC4 | 100 | 140 | 1.0e-05 | 25.0 | 1.5e-08 | 1.8e-05 | 24.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2388_g08686.t3 | gi|641796288|ref|XP_008161533.1| | PREDICTED: RING finger protein 11-like [Chrysemys picta bellii] | 0.0 |
| habu1_s2388_g08686.t3 | gi|637336705|ref|XP_003225246.2| | PREDICTED: RING finger protein 11-like [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.8 |
| Venom grand-1 | 18.0 |
| Pit, infrared sensing | 16.6 |
| Nose | 12.3 |
| Brain-1 | 15.4 |
| Eye | 13.8 |
| fetal fibroblast | 16.2 |
| venom gland-2 | 19.2 |
| Brain-2 | 14.5 |
| Spleen | 15.0 |
| Lung | 13.0 |
| Liver | 28.6 |
| Kidney | 22.5 |
| Pancreas | 23.9 |
| Small intestine | 10.3 |
| Large intestine | 10.5 |
| Stomach | 14.6 |
| heart | 25.3 |
| ovary | 46.0 |
| cheek muscle | 84.7 |
Transcript
| Transcript ID | habu1_s2388_g08686.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08686.t1 ccctctagagctggtagacggaggttggccgggccggtcccggcagtggcccggagcgggcgggcatggggggctgcctc tcctcgcaggcagctgatgatctgtcgctactcaacgattctaccggcgatggggcgagtcttgggcctggagacccacc ccccctccctgccccgccgcccccctaccaggatcacactgcaattccagtgtatcatccaacgcctagccaggcgcgtc ttgccacacaactaacagaagaggagcaaatccggatagctcaaaggattggactaattcagcaccttcctaaaggaata tttgatccaggctcagagccatcagaaaagaaaatgaaagaaaaatggagcaggggatcagtgtcctactggcttcatga tcagaaaggctatctatgtttgattgatattgaccgaaaactatccagagtgatattcaaggtgtgtaatctgtatgctg gattttgtatatggagatcccatccgattcctgccttgtctacacatctaccatgtaaactgcattgatgactggctgat gcgatcattcacatgtccttcttgcatggagccagtggatgctgctctgctctcctcctatgagactaactgaggtggct ttgggccctgctcttgttcatgcttccaggctgttgatatattgggggcctgggatgtgggacattatttgcacaattct gggtacaccaaagaaaccggccccagcccctacggacacatgcagccaggctggctgtattaaaggatgatttgtgccat attttg |
|
| Transcript ID | habu1_s2388_g08686.t2 |
| Definition | - |
>habu1_s2388_g08686.t2 ccctctagagctggtagacggaggttggccgggccggtcccggcagtggcccggagcgggcgggcatggggggctgcctc tcctcgcaggcagctgatgatctgtcgctactcaacgattctaccggcgatggggcgagtcttgggcctggagacccacc ccccctccctgccccgccgcccccctaccaggatcacactgcaattccagtgtatcatccaacgcctagccaggcgcgtc ttgccacacaactaacagaagaggagcaaatccggatagctcaaaggattggactaattcagcaccttcctaaaggaata tttgatccaggctcagagccatcagaaaagaaaatgaaagaaaaatggagcaggggatcagtgtcctactggcttcatga tcagaaaggctatctatgtttgattgatattgaccgaaaactatccagagtgatattcaaggtgaatatacacaaggtgt gtaatctgtatgctggattttgtatatggagatcccatccgattcctgccttgtctacacatctaccatgtaaactgcat tgatgactggctgatgcgatcattcacatgtccttcttgcatggagccagtggatgctgctctgctctcctcctatgaga ctaactgaggtggctttgggccctgctcttgttcatgcttccaggctgttgatatattgggggcctgggatgtgggacat tatttgcacaattctgggtacaccaaagaaaccggccccagcccctacggacacatgcagccaggctggctgtattaaag gatgatttgtgccatattttg |
|
| Transcript ID | habu1_s2388_g08686.t3 |
| Definition | - |
>habu1_s2388_g08686.t3 ccctctagagctggtagacggaggttggccgggccggtcccggcagtggcccggagcgggcgggcatggggggctgcctc tcctcgcaggcagctgatgatctgtcgctactcaacgattctaccggcgatggggcgagtcttgggcctggagacccacc ccccctccctgccccgccgcccccctaccaggatcacactgcaattccagtgtatcatccaacgcctagccaggcgcgtc ttgccacacaactaacagaagaggagcaaatccggatagctcaaaggattggactaattcagcaccttcctaaaggaata tttgatccaggctcagagccatcagaaaagaaaatgaaagagtgtgtaatctgtatgctggattttgtatatggagatcc catccgattcctgccttgtctacacatctaccatgtaaactgcattgatgactggctgatgcgatcattcacatgtcctt cttgcatggagccagtggatgctgctctgctctcctcctatgagactaactgaggtggctttgggccctgctcttgttca tgcttccaggctgttgatatattgggggcctgggatgtgggacattatttgcacaattctgggtacaccaaagaaaccgg ccccagcccctacggacacatgcagccaggctggctgtattaaaggatgatttgtgccatattttg |
|
Protein
| Protein ID | habu1_s2388_g08686.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08686.t1 MGGCLSSQAADDLSLLNDSTGDGASLGPGDPPPLPAPPPPYQDHTAIPVYHPTPSQARLATQLTEEEQIRIAQRIGLIQH LPKGIFDPGSEPSEKKMKEKWSRGSVSYWLHDQKGYLCLIDIDRKLSRVIFKVCNLYAGFCIWRSHPIPALSTHLPCKLH |
|
| Protein ID | habu1_s2388_g08686.t2 |
| Definition | - |
>habu1_s2388_g08686.t2 MGGCLSSQAADDLSLLNDSTGDGASLGPGDPPPLPAPPPPYQDHTAIPVYHPTPSQARLATQLTEEEQIRIAQRIGLIQH LPKGIFDPGSEPSEKKMKEKWSRGSVSYWLHDQKGYLCLIDIDRKLSRVIFKVNIHKVCNLYAGFCIWRSHPIPALSTHL PCKLH |
|
| Protein ID | habu1_s2388_g08686.t3 |
| Definition | - |
>habu1_s2388_g08686.t3 MGGCLSSQAADDLSLLNDSTGDGASLGPGDPPPLPAPPPPYQDHTAIPVYHPTPSQARLATQLTEEEQIRIAQRIGLIQH LPKGIFDPGSEPSEKKMKECVICMLDFVYGDPIRFLPCLHIYHVNCIDDWLMRSFTCPSCMEPVDAALLSSYETN |
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