Gene
| Gene Model ID | habu1_s2388_g08687 |
|---|---|
| Locus | habu1_scaffold2388 : 540728 ... 571690 : + |
| To GenomeBrowser | habu1_scaffold2388:540728..571690 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transportin-2 isoform x1 | GO:0006886 GO:0008536 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08687.t1 | 1 | 1 | IBN_N | 17 | 77 | 2.2e-07 | 30.6 | 2.1e-09 | 2.2e-06 | 27.4 |
| habu1_s2388_g08687.t1 | 2 | 1 | Arm | 107 | 133 | 2.1e-15 | 55.8 | 4.9e-06 | 0.0052 | 16.5 |
| habu1_s2388_g08687.t1 | 4 | 1 | HEAT_2 | 153 | 249 | 1.6e-23 | 82.7 | 1.0e-08 | 1.1e-05 | 25.6 |
| habu1_s2388_g08687.t1 | 2 | 1 | Vac14_Fab1_bd | 183 | 250 | 2.5e-15 | 56.6 | 1.5e-06 | 0.0016 | 18.7 |
| habu1_s2388_g08687.t1 | 3 | 1 | HEAT | 194 | 222 | 6.2e-35 | 116.1 | 7.6e-06 | 0.0081 | 16.1 |
| habu1_s2388_g08687.t1 | 4 | 2 | HEAT_2 | 358 | 439 | 1.6e-23 | 82.7 | 7.0e-07 | 0.00074 | 19.7 |
| habu1_s2388_g08687.t1 | 4 | 3 | HEAT_2 | 377 | 480 | 1.6e-23 | 82.7 | 3.3e-09 | 3.5e-06 | 27.2 |
| habu1_s2388_g08687.t1 | 1 | 1 | HEAT_EZ | 388 | 441 | 7.8e-32 | 108.9 | 4.2e-14 | 4.5e-11 | 42.8 |
| habu1_s2388_g08687.t1 | 2 | 2 | Vac14_Fab1_bd | 391 | 477 | 2.5e-15 | 56.6 | 6.0e-07 | 0.00063 | 20.0 |
| habu1_s2388_g08687.t1 | 1 | 1 | Adaptin_N | 393 | 517 | 8.0e-11 | 40.9 | 6.5e-07 | 0.00069 | 18.0 |
| habu1_s2388_g08687.t1 | 1 | 1 | Cnd1 | 415 | 561 | 8.6e-15 | 55.0 | 4.5e-07 | 0.00047 | 20.0 |
| habu1_s2388_g08687.t1 | 3 | 2 | HEAT | 416 | 443 | 6.2e-35 | 116.1 | 2.9e-07 | 0.00031 | 20.5 |
| habu1_s2388_g08687.t1 | 4 | 4 | HEAT_2 | 417 | 487 | 1.6e-23 | 82.7 | 4.5e-07 | 0.00047 | 20.3 |
| habu1_s2388_g08687.t1 | 2 | 2 | Arm | 417 | 442 | 2.1e-15 | 55.8 | 2.8e-06 | 0.003 | 17.3 |
| habu1_s2388_g08687.t1 | 3 | 3 | HEAT | 645 | 675 | 6.2e-35 | 116.1 | 5.2e-07 | 0.00055 | 19.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2388_g08687.t1 | gi|602628177|ref|XP_007421026.1| | PREDICTED: transportin-2 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2388_g08687.t1 | gi|327281014|ref|XP_003225245.1| | PREDICTED: transportin-2 [Anolis carolinensis] | 0.0 |
| habu1_s2388_g08687.t1 | gi|641796286|ref|XP_008161532.1| | PREDICTED: transportin-2 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s2388_g08687.t1 | gi|641796284|ref|XP_008161531.1| | PREDICTED: transportin-2 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2388_g08687.t1 | gi|591366817|ref|XP_007058262.1| | PREDICTED: LOW QUALITY PROTEIN: transportin-2 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 9.1 |
| Venom grand-1 | 13.5 |
| Pit, infrared sensing | 7.9 |
| Nose | 7.9 |
| Brain-1 | 14.4 |
| Eye | 12.4 |
| fetal fibroblast | 27.2 |
| venom gland-2 | 14.7 |
| Brain-2 | 10.5 |
| Spleen | 10.8 |
| Lung | 10.7 |
| Liver | 13.1 |
| Kidney | 35.3 |
| Pancreas | 16.8 |
| Small intestine | 18.2 |
| Large intestine | 7.3 |
| Stomach | 13.9 |
| heart | 10.5 |
| ovary | 49.6 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s2388_g08687.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08687.t1 aataccctgggttttactgtaaatcttttaaccttgttttggaatagtatcctgctattcagtccaaaagtaatagaaag tttccttgcattaggtcatgataggcagttttccgtcatggactggcaaccagatgaacagggtctccagcaagttcttc agttactcaaagattcccagtctccaaacacagcaacccagcgtattgtgcaagatttctaatcccactgatctctttaa aacagatgaacctacccgttctctgagtggcttgatcctgaagaacaatgtgaaagcccactatcagagttttccccagc ctgttgctgaatttattaagcaagagtgtcttaataacataggggatgcttcttctcttataagagctacaattggtatt cttataacaacaattgcttccaaaggagaactgcagatgtggccagagcttctgccccaactctgcaatttacttaattc tgaagattacaacacatgtgaaggggcatttggtgccttacagaagatctgtgaagattctgctgagctcctggacagcg atgccctcaatcggcctcttaatgtcatgatcccaaagttccttcagttcttcaagcactgcagccccaaaattaggtca catgctattgcttgtgtcaaccagttcatcatggagagggcccaggccttgatggataacatcgatacatttatcgagca cttatttgccttggcagtagatgaagatcctgaggttcgaaagaatgtttgcagagcattagtaatgctgttagaagtgc gaattgaccgactgatccctcacatgcatagtatcatccaatatatgcttgagaggactcaggacagtgatgaaaatgtg gcattggaagcctgtgaattctggctgacgttggctgagcaacccatctgcaaagaggtgctatcttcacctctagtaca attgattcctattttggtgaagggcatgaaatattcagaaatcgacatcatattgttgaagggtgatgtggaggaggatg aagccatcccagatagcgaacaagatatcaaacctcgctttcataaatcacgcacagttactctgcagcacgaagaggag cggttgcaggatgaggaagatggagaggatgaggacgatgacgatgacacactgtctgactggaatctgagaaagtgttc ggcggctgcccttgatgtgttggccaatgtctttcgagatgagctcctcccgcatctgctcccactactcaaggggctgc ttttccatcctgagtgggtcatcaaggagtctggaatccttgtcttaggggcgattgctgaaggctgcatgcagggcatg gttccttatctccctgagctgattccccacttgatccaatgtctgtctgacaaaaaggccctggtgcgttccatcgcttg ctggaccctgagccgctatgcacattgggttgtaagccaacccccagacatgtatctcaagcctctgatgacagagttgc tcaaaaggattcttgacagtaataaaagagtgcaggaggctgcttgcagtgcttttgccacccttgaggaggaagcttgc acagaattggtcccatatctcagtttcattctggatactttggtttttgcttttggaaaataccagcataagaatttgct gatcctgtatgatgcaattggcactctggctgattctgttggacaccacctcaaccagccggaatatatccaaaagttaa tgcctccactgattcagaaatggaatgagctgaaggatgaggataaggatcttttccccctcctagaatgtttgtcatct gtagcaactgctctacaaagtggcttcctaccgtactgtgaaccggtctaccagcgctgcgtaacactggtgcagaaaac cttggctcaagcaatgatgtacagtcaacaccctgatcagtatgaagcacctgataaagacttcatgatagttgctcttg atctgctcagtggtttagctgaaggtcttggatgtcatgttgagcagcttgtggcccgtagcaatataatgactctactg ttccagtgcatgcaagatactatgccagaggttcggcaaagctcctttgcactactgggagatcttaccaaagcctgttt tatgcacgtcaagccatgcatagctgaattcatgcctatcttagggaccaacctgaatccagaattcatttctgtgtgca acaatgctacttgggcaattggagaaatatgcatgcaaatgggggctgaaatgcaaccatatgttcagatggtgctgaat aatctcgtggagatcatcaacagaccaaatacccctaaaactcttctggaaaacacagccatcacaattggccgcttggg ctacgtctgtcctcaggaagtggcaccaatgttgcagcagtttatcagaccttggtgtacatctttgaggaacattcgtg ataatgaagagaaggactctgctttccgtggcatctgtatgatgattggagtaaaccctggtggagttgtacaagatttt attttcttctgtgatgctgttgcttcatgggtgagtccaaaggatgacctgagagatatgttttataagattctccatgg tttcaaagatcaagttggggaagataactggcagcagttctcagagcagtttcctccacttctgaaagagaggcttgctg cattctatggtgtttaggcgaagcagcaaaaccatacttggttcctgtgtgcgctgggagggatactgggaactcgtcca taacccagtgttgcagatccctgttaatggggggttagggaggacgggaagagcattgtgggacataaaatgaccgctcc ccatctcctgaaatttacaaagttgggggggagggtgggcctccataaccaattgaaacaaaaaccagggtatctcagtg gcagaaggaaaggcctcttttattcagaggccatcatagatggaatggggtggggtgggactcggccctgcgctgagaaa agggagcaaacttaaactgcaacactcttgagaaggggatctaactaggggccatcataaagaactagctaataataata aaggataggtttaagatgttaaaa |
|
Protein
| Protein ID | habu1_s2388_g08687.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08687.t1 MNRVSSKFFSYSKIPSLQTQQPSVLCKISNPTDLFKTDEPTRSLSGLILKNNVKAHYQSFPQPVAEFIKQECLNNIGDAS SLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSAELLDSDALNRPLNVMIPKFLQFF KHCSPKIRSHAIACVNQFIMERAQALMDNIDTFIEHLFALAVDEDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLE RTQDSDENVALEACEFWLTLAEQPICKEVLSSPLVQLIPILVKGMKYSEIDIILLKGDVEEDEAIPDSEQDIKPRFHKSR TVTLQHEEERLQDEEDGEDEDDDDDTLSDWNLRKCSAAALDVLANVFRDELLPHLLPLLKGLLFHPEWVIKESGILVLGA IAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMYLKPLMTELLKRILDSNKRVQEAACSA FATLEEEACTELVPYLSFILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDL FPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYSQHPDQYEAPDKDFMIVALDLLSGLAEGLGCHVEQLV ARSNIMTLLFQCMQDTMPEVRQSSFALLGDLTKACFMHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEM QPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGV NPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEDNWQQFSEQFPPLLKERLAAFYGV |
|