Gene
| Gene Model ID | habu1_s2388_g08689 |
|---|---|
| Locus | habu1_scaffold2388 : 599308 ... 609557 : - |
| To GenomeBrowser | habu1_scaffold2388:599308..609557 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| wd repeat domain-containing protein 83 | GO:0000375 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08689.t1 | 5 | 1 | WD40 | 16 | 53 | 6.50006e-41 | 136.7 | 2.6e-11 | 1.9e-07 | 30.6 |
| habu1_s2388_g08689.t1 | 5 | 2 | WD40 | 58 | 95 | 6.50006e-41 | 136.7 | 2.7e-09 | 2.0e-05 | 24.2 |
| habu1_s2388_g08689.t1 | 5 | 3 | WD40 | 99 | 137 | 6.50006e-41 | 136.7 | 1.3e-12 | 1.0e-08 | 34.7 |
| habu1_s2388_g08689.t1 | 5 | 4 | WD40 | 192 | 217 | 6.50006e-41 | 136.7 | 1.2e-07 | 0.00087 | 19.0 |
| habu1_s2388_g08689.t1 | 5 | 5 | WD40 | 224 | 263 | 6.50006e-41 | 136.7 | 2.0e-06 | 0.015 | 15.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2388_g08689.t1 | gi|602628171|ref|XP_007421023.1| | PREDICTED: WD repeat domain-containing protein 83 [Python bivittatus] | 0.0 |
| habu1_s2388_g08689.t1 | gi|558110826|ref|XP_006111920.1| | PREDICTED: WD repeat domain-containing protein 83 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s2388_g08689.t1 | gi|327281012|ref|XP_003225244.1| | PREDICTED: WD repeat domain-containing protein 83 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s2388_g08689.t1 | gi|564247459|ref|XP_006262830.1| | PREDICTED: WD repeat domain-containing protein 83 [Alligator mississippiensis] | 0.0 |
| habu1_s2388_g08689.t1 | gi|557280994|ref|XP_006023472.1| | PREDICTED: WD repeat domain-containing protein 83 isoform X1 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.1 |
| Venom grand-1 | 8.6 |
| Pit, infrared sensing | 7.1 |
| Nose | 8.1 |
| Brain-1 | 10.3 |
| Eye | 8.1 |
| fetal fibroblast | 12.6 |
| venom gland-2 | 13.5 |
| Brain-2 | 11.4 |
| Spleen | 6.8 |
| Lung | 6.4 |
| Liver | 17.1 |
| Kidney | 7.0 |
| Pancreas | 7.9 |
| Small intestine | 5.3 |
| Large intestine | 5.9 |
| Stomach | 7.0 |
| heart | 9.5 |
| ovary | 20.6 |
| cheek muscle | 17.2 |
Transcript
| Transcript ID | habu1_s2388_g08689.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08689.t1 acgcttcccttgactcgaaaggccttgaaactaaaatttctggccgaggaggaggaggaggaggcggcggaagaatgttg tagccctgcctttctcgcttgaagaaattatgccgagagggggtggaactaatgaaactagatcggaggagtaaattgac gagtcgacgcctgtatttccctataatcttccttcttgctatttcggtaatgcaattcaagaggcaacaaatacccagaa gcaacatagtcctaatgcatcagcctgccttaggatatacctgtttctagagattttgctgtggatgttcagtattatgc atgtgggattttgtttagcaatcaagatacatctatgttatggcctttccagaacccaaacccaagaaacctgagcttcc ccaaaaattgcttgctacactagagtgtaaacaaggagctataagagcagtgagattcaatgtggatggaaattactgtc tcacctgtggcagtgacaaatcactcaagctttggaacccacacaaaaggactctcctcaagacatattgtggccatggc tatgaagtcctagatgctgcagggtcatttgacaacagccaactttgttcatgtggagcagacaaaacagttgtgctgtg ggatgtcgccacaggccaagtgattcgcaagttccgtggccatgcagggaaggtgaattgtgtccagttcaatgaggaag ccactataattctttcaggttccattgactccagtgtccgttgctgggattgccgctcacgtagaccagaacccatccaa atcttggatgaggccaaagatggcatctccagtcttaaagtctcagattatgaaattcttacaggttctgtggatggacg tgtccgacgttatgacctccgtgctggagaactctgctcagactacattggaagtcccattacctgtgtatgtttcagca aggatgggcaatgcacactggctgctagcttggattctacactgcgattgctggacaaggatacaggcgagctactagga gactacaccggccacaagaatgtcacttacaagatggactgctgcctgagtgaaagagacacacatattgggagctgctc agaagatgggaaagtctatttctgggatttggttgagggctcccttgttctggccttgccagtgtgcaatactgctgtcc agtcactgtccttccacccagttgaaacctgcctgctcactgctgcagggggtcttgttcagtgttggagggaagaatct tacacagccgaggaaggtgtgcctgcataactagcattgccgtctgagcaagattgcagatacaggacgatggacctctc cggtgtacttctcttacagttctatgagtatagttctatgtactttgctttcaggaggaaagatggagcataatttggac tcagcttcttctgtagaaccagcctgactgaatgctgtccttgagctcaaaaagggctcaaaggtttccttgctttagat gacagtatttttaaattcagcctatgtattacagacattagtcaaggaaaaagtttcttttttaaaattgggtgtttctg gattagaaggaaataacagtttaaatggtacgtgggcattgttttattgtaagttgttgtggctcagatgcttaaactac ataaacactagtcctgattcttcacttggacaaatacattaattgaaattgtcactgtaaaaaaattaagtaattttgaa aataaaatataagtttgctttctgacccttagatgttttacctgtttaaaatgacaggaaaaatattttgattgctgatg ttcagaagtgttcagacatcgttggtcacatctgcttggttagtcaactgctacgtgcgtgtcttcttaattttgcacct gaatagaaaaaaaagccttaatgttaccaattgttaatgacagttattgaaaaaaatgtttttaaaaggctgttgtccgg gaaagttcaaatgtaacttgaacttttctagggagctcatcctccttcaatagaaatatagtattttttaaattggatgt tt |
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Protein
| Protein ID | habu1_s2388_g08689.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08689.t1 MAFPEPKPKKPELPQKLLATLECKQGAIRAVRFNVDGNYCLTCGSDKSLKLWNPHKRTLLKTYCGHGYEVLDAAGSFDNS QLCSCGADKTVVLWDVATGQVIRKFRGHAGKVNCVQFNEEATIILSGSIDSSVRCWDCRSRRPEPIQILDEAKDGISSLK VSDYEILTGSVDGRVRRYDLRAGELCSDYIGSPITCVCFSKDGQCTLAASLDSTLRLLDKDTGELLGDYTGHKNVTYKMD CCLSERDTHIGSCSEDGKVYFWDLVEGSLVLALPVCNTAVQSLSFHPVETCLLTAAGGLVQCWREESYTAEEGVPA |
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