Gene
| Gene Model ID | habu1_s2388_g08716 |
|---|---|
| Locus | habu1_scaffold2388 : 1917170 ... 1960504 : - |
| To GenomeBrowser | habu1_scaffold2388:1917170..1960504 |
| Genes list of scaffold | habu1_scaffold2388 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase ddx39a | GO:0000398 GO:0004386 GO:0005524 GO:0005634 GO:0005737 GO:0006406 GO:0016020 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2388_g08716.t1 | 1 | 1 | DUF3314 | 122 | 275 | 0.0 | 184.9 | 0.0 | 0.0 | 184.0 |
| habu1_s2388_g08716.t1 | 1 | 1 | DEAD | 372 | 537 | 9.8e-39 | 132.5 | 8.70066e-42 | 2.2e-38 | 131.4 |
| habu1_s2388_g08716.t1 | 1 | 1 | Helicase_C | 608 | 684 | 2.8e-22 | 78.3 | 3.8e-25 | 9.3e-22 | 76.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2388_g08716.t1 | gi|602661003|ref|XP_007436162.1| | PREDICTED: ATP-dependent RNA helicase DDX39A [Python bivittatus] | 0.0 |
| habu1_s2388_g08716.t1 | gi|38372907|ref|NP_932099.2| | ATP-dependent RNA helicase DDX39A [Mus musculus] | 0.0 |
| habu1_s2388_g08716.t1 | gi|674091098|ref|XP_008853627.1| | PREDICTED: ATP-dependent RNA helicase DDX39A [Nannospalax galili] | 0.0 |
| habu1_s2388_g08716.t1 | gi|74192407|dbj|BAE43010.1| | unnamed protein product [Mus musculus] | 0.0 |
| habu1_s2388_g08716.t1 | gi|74205930|dbj|BAE23239.1| | unnamed protein product [Mus musculus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.9 |
| Venom grand-1 | 6.4 |
| Pit, infrared sensing | 7.2 |
| Nose | 9.1 |
| Brain-1 | 1.4 |
| Eye | 4.4 |
| fetal fibroblast | 36.8 |
| venom gland-2 | 9.6 |
| Brain-2 | 1.2 |
| Spleen | 5.5 |
| Lung | 4.4 |
| Liver | 2.5 |
| Kidney | 4.1 |
| Pancreas | 4.3 |
| Small intestine | 6.3 |
| Large intestine | 4.2 |
| Stomach | 3.7 |
| heart | 2.1 |
| ovary | 7.7 |
| cheek muscle | 3.2 |
Transcript
| Transcript ID | habu1_s2388_g08716.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08716.t1 gtcgaggactacccaaccggtcaccctgcaaggattggttgttaagttattttttcatcataactgcaaacagtcactaa acaaagcagtcattaaatgaggactacctatagagggtaattgaaataaatgctgaatcagtacacagaatctcactggc tgagcaatgctcaaccacagactgaggcttcatcagaaatgaacatcactttagaaaagttgcttgctccaataactgaa aaattgaaatatttgctgaagaaagcagaagacttccagacttaccttctgtacagcagagacagaatgcagaaggaaca gtttgccaaagccatgcccacctttttgcagatgtgccagccatatttccactatttggaatctacagcacgcagctgca caccttatttaagacctccacaggaaccagtccggaaaagacttctggaaatttctcagcaattggcttgccagcttgag caactggtgctgatgtatgcttctttcagctttgtttctcttgaagacacagacccattcagcatatcgtgtttcttctg tgggaaattttggatgaatgagactcggcaagtttctatctttcgatactgtatctcagcaccatacacagctgctcata ttcctcacaatctttataagaagatgcgctggaatctggacatcttggaaggttctgctgctcggaatcaaacactccgg acagaatactacttcctatgcttccgtgatacaggagatgaaacaactgtgaaaatgcagaagctttggtccataggacg ctgggtgcctttagatcctgacagtgaacacagttctgatgtgctatcctgggtgttgtgtcatcagcccacaggggatt accagcagctcctaacaattggatttgaggaaccttcccacaccttagctacagacctcttagtgcagatgctaagtgct cagagttctggtcttcttaatcggcttgaggcgtttagggttaaaatcctgaaacccttccacttcatttcaaaggatat ggctgagcaggatgtggagaacgagttgctggattatgaagatgatgaagagcctcaaggagtgacagatgtaactcctc cccttgttaaaaaggatgtgaagggctcttatgtctccattcacagttctggcttccgagatttcctgctgaagccagaa ttacttcgtgccattgtggattgtggctttgaacatccatcagaagtacaacatgaatgcattccacaggcaattctagg catggatgtactatgtcaagccaaatcaggcatgggcaagactgctgtttttgtattggctactctacagcagattgagc cagtggatgggcaggtctccgtgctagtgatgtgtcatacccgggaactggcatttcagatcagtaaagaatatgaacgc ttctcaaagtatatgaccaatgtcaaggtgtcagttttctttgggggtctttctatcaagaaagatgaagaggtacttaa gaaaaactgtccccatattgttgtgggaaccccaggccgtactctagcactggtgcgcaacaagacactcaacctgcgca atgtgaagcattttgttttggatgaatgtgacaagatgcttgaacagctagacatgcgccgtgacgtacaggagatcttt cgattgactccccctgaaaagcagtgcatgatgtttagtgccaccttgagcaaggagatccggcctgtctgcaggaagtt catgcaggaccccatggaggtatttgtagatgacgagacaaagctgactctacatggtctgcagcaatactacgtaaagc tgaaggacacagagaaaaaccgcaaactttttgacctgctagatgtacttgagttcaatcaggttgtgatatttgtaaaa tctgtgcagcgctgcatggcattagcccaacttctgatcgagcagaacttcccagctattgctatacacaggggcatgtc tcaggaagagaggctctctcggtatcaacaattcaaagatttccagcgtcgtatcttggtggccactaatctttttggcc gtgggatggacatagagcgagtcaacatagtcttcaactatgatatgccggaggattccgatacctatttacacagggtg gcccgggctgggcgctttggtacgaaaggcttggcgattacctttgtgtcagatgaaggtgatgccaaaatccttaatga agtacaggatcgctttgaggtcaatgtggccgagctcccagaagagatagacatctcctcttatatagaacaaagccggt agcctgagttcacggaacccagaatggaacaggaggttgagcacatcccacgtcttctgctgaactcagatgaatatctt cttgaaaagatacgctatgcaaaatgtagggatgttggttcttaacgtggagtcttacaaagtgcccagatggtattttt gcctcagctcaagcctgggggcttttttaattagatgtttctattttctgaatagtcagcccctggggctatgtttcata aataaaaatttaaaataactttttcggg |
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Protein
| Protein ID | habu1_s2388_g08716.t1 |
|---|---|
| Definition | - |
>habu1_s2388_g08716.t1 MLNQYTESHWLSNAQPQTEASSEMNITLEKLLAPITEKLKYLLKKAEDFQTYLLYSRDRMQKEQFAKAMPTFLQMCQPYF HYLESTARSCTPYLRPPQEPVRKRLLEISQQLACQLEQLVLMYASFSFVSLEDTDPFSISCFFCGKFWMNETRQVSIFRY CISAPYTAAHIPHNLYKKMRWNLDILEGSAARNQTLRTEYYFLCFRDTGDETTVKMQKLWSIGRWVPLDPDSEHSSDVLS WVLCHQPTGDYQQLLTIGFEEPSHTLATDLLVQMLSAQSSGLLNRLEAFRVKILKPFHFISKDMAEQDVENELLDYEDDE EPQGVTDVTPPLVKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV FVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMTNVKVSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRTLA LVRNKTLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPPEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLT LHGLQQYYVKLKDTEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFKDFQR RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNVAELPEEI DISSYIEQSR |
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