Gene
| Gene Model ID | habu1_s2396_g08733 |
|---|---|
| Locus | habu1_scaffold2396 : 176817 ... 187925 : - |
| To GenomeBrowser | habu1_scaffold2396:176817..187925 |
| Genes list of scaffold | habu1_scaffold2396 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u6 snrna-associated sm-like protein lsm4 | GO:0005515 GO:0005688 GO:0005829 GO:0008380 GO:0043928 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2396_g08733.t2 | 1 | 1 | LSM | 2 | 55 | 1.2e-12 | 47.1 | 1.3e-16 | 1.9e-12 | 46.5 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 22.5 |
| Venom grand-1 | 26.2 |
| Pit, infrared sensing | 22.0 |
| Nose | 22.0 |
| Brain-1 | 17.2 |
| Eye | 26.2 |
| fetal fibroblast | 75.1 |
| venom gland-2 | 21.5 |
| Brain-2 | 16.6 |
| Spleen | 16.6 |
| Lung | 31.2 |
| Liver | 30.7 |
| Kidney | 23.1 |
| Pancreas | 12.0 |
| Small intestine | 13.1 |
| Large intestine | 22.5 |
| Stomach | 19.6 |
| heart | 30.7 |
| ovary | 123.4 |
| cheek muscle | 57.1 |
Transcript
| Transcript ID | habu1_s2396_g08733.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08733.t1 gttactgtggcatcgcagatagaaggatgcttccactgtccttgctgaaaacggcacagaaccacccaatgctggtggaa ctcaaaaatggtgaaacttacaatggccacttggttagctgtgataactggatgaacatcaatcttcgagaagttatttg cacatcaagggatggagacaaattctggaggatgcctgaatgttacatccgtggcagcaccatcaaatacctgcgcattc ctgatgagatcatcgacatggtgaaagaagaagtggtctccaaaggccgtggccgtggtgggatgcagcaacagaagcag cagaaaggacgtggcatcggtggcactgggcgaggagtatttggaggccgtggccgaggaggggccccagggagtggccg aggacagcaagaaaagaagccagggagacaagcagcgaagcagtgagaagctgaactgtggccaggaagtgctcggcgcc caaatgctgcgtcattgggacagattggtttgctgtctcctcttaacaaaacaaagttgtaattttttaaaaaatgtgaa taactgggacattagacatcttaggagggtttacaggtgttctaccgctcaagcacatagttcatcttctgtttgagtgg gcgctgatggagagtgctcaaactggctcccctctccttgaaattactgcggtagccaagttcacatttttgaaattgga gcgataatgtgcagtttttgtgtgagcagtttcattctaattgataaaccatgaaaagcatttaagcaagcaaaaaaaaa aaaccttgattgtgttgtgcagaagatttgcaatcctgggttctcggtagccaaagttcccagaatttagcagctggaga gtgaatgttgttttttcctcctagctgaggagaagaattaaaagcaatgaaacagcttacctcg |
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| Transcript ID | habu1_s2396_g08733.t2 |
| Definition | - |
>habu1_s2396_g08733.t2 gttactgtggcatcgcagatagaaggatggtgagacttgcgaatggggaaagggagctaacggagaaaattttatttctg tttaagaataagacttccactgtccttgctgaaaacggcacagaaccacccaatgctggtggaactcaaaaatggtgaaa cttacaatggccacttggttagctgtgataactggatgaacatcaatcttcgagaagttatttgcacatcaagggatgga gacaaattctggaggatgcctgaatgttacatccgtggcagcaccatcaaatacctgcgcattcctgatgagatcatcga catggtgaaagaagaagtggtctccaaaggccgtggccgtggtgggatgcagcaacagaagcagcagaaaggacgtggca tcggtggcactgggcgaggagtatttggaggccgtggccgaggaggggccccagggagtggccgaggacagcaagaaaag aagccagggagacaagcagcgaagcagtgagaagctgaactgtggccaggaagtgctcggcgcccaaatgctgcgtcatt gggacagattggtttgctgtctcctcttaacaaaacaaagttgtaattttttaaaaaatgtgaataactgggacattaga catcttaggagggtttacaggtgttctaccgctcaagcacatagttcatcttctgtttgagtgggcgctgatggagagtg ctcaaactggctcccctctccttgaaattactgcggtagccaagttcacatttttgaaattggagcgataatgtgcagtt tttgtgtgagcagtttcattctaattgataaaccatgaaaagcatttaagcaagcaaaaaaaaaaaaccttgattgtgtt gtgcagaagatttgcaatcctgggttctcggtagccaaagttcccagaatttagcagctggagagtgaatgttgtttttt cctcctagctgaggagaagaattaaaagcaatgaaacagcttacctcg |
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Protein
| Protein ID | habu1_s2396_g08733.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08733.t1 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQ QQKQQKGRGIGGTGRGVFGGRGRGGAPGSGRGQQEKKPGRQAAKQ |
|
| Protein ID | habu1_s2396_g08733.t2 |
| Definition | - |
>habu1_s2396_g08733.t2 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQ QQKQQKGRGIGGTGRGVFGGRGRGGAPGSGRGQQEKKPGRQAAKQ |
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