Gene
| Gene Model ID | habu1_s2396_g08736 |
|---|---|
| Locus | habu1_scaffold2396 : 318836 ... 371360 : + |
| To GenomeBrowser | habu1_scaffold2396:318836..371360 |
| Genes list of scaffold | habu1_scaffold2396 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2396_g08736.t3 | 1 | 1 | SSDP | 104 | 384 | 0.0 | 267.4 | 0.0 | 0.0 | 267.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2396_g08736.t3 | gi|472370368|ref|XP_004404696.1| | PREDICTED: single-stranded DNA-binding protein 4 isoform X1 [Odobenus rosmarus divergens] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.1 |
| Venom grand-1 | 1.7 |
| Pit, infrared sensing | 2.6 |
| Nose | 1.2 |
| Brain-1 | 10.1 |
| Eye | 2.8 |
| fetal fibroblast | 6.0 |
| venom gland-2 | 0.5 |
| Brain-2 | 8.7 |
| Spleen | 8.0 |
| Lung | 1.0 |
| Liver | 0.0 |
| Kidney | 0.9 |
| Pancreas | 0.0 |
| Small intestine | 0.7 |
| Large intestine | 2.6 |
| Stomach | 1.4 |
| heart | 0.6 |
| ovary | 1.3 |
| cheek muscle | 8.3 |
Transcript
| Transcript ID | habu1_s2396_g08736.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08736.t1 ggtcgccaagcaagtctgtccgccatttttttccccttttccggcgggtgccttacctcccttgggctgggccagctggt ggtcggcctgctccgtctctgctgcttgccagctacgcctcggccggcgcagggggcggaaccacgcatgcgcggcnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgagaaccactggtatagggtttcctt cctgagcaggggggttgactagaggacctccaagatcccttccaactctgttattctgttctgttatgatgtaatcaaag ctccatctgtttcttatatgcgtcacatcacgatgtcataactgccattttctttttccttttttccgtatgtcccggaa ttcattaaaagacaatcatactggaatcagaatcataagattgaaaaggaccttgaagatccaaggtccaaccccaaccc atggcaggctgttggcactatatgtatacgaatatctccttcatgttggggctcagaaatctgcacagaccttcctctca gagatccggtgggaaaagaacattaccctgggagaaccacctggcttccttcactcctggtggtgtgtattttgggacct gtactgtgcagcacctgatcgacgggagacctgtgagcactcaagtgaggccaaagctttccacgattatagctccgcaa ctacaaccagtcctgtgatggccaacctgccacccagtgatgccatccccagcgggcctatgttgtcgggctttttccag ggaccacctggctcccagccatccctacatgctcaagctcccttgcacaaccccaatgcggcaatgataggaccccataa tcagccattcatgccttcacgcttccctggtgggctccgtccttccgttcgaatgccaacccagccatctatgggtgtgt ctggccaacctctgatgtccagtgcaatggatccggcaatccgatcacaagtagggcatcctaacatgggcccgatgcag cgcatgaccccaccacggggtatgacaggaatggctccgcagaattatggtggtggcataagacctcctccagggtccct ggtttgccctggtatgcccacaatgaacatagctccgggtgttcgaggatcctggccaaatataaacacaaactcggtat cctattcctcatcttctcctggcagctatgggggaggcggaggcccccctggcacccctctcatgccaagccctggagac tccaccaactctagtgaaaatatgtacatgatgaactctgttggtcctccaccaagccggcctggattctccatggggcc aagtccagaaggtccaatggcgggaatgagtgccatggaaccccatcatatgaatggatcactaggtccaggtgaaatag atgggatgcccaagaattccccgggtagcatggccagcatagctaacccaccgggcaccccacgtgatgacagcagcagt gagatgggcagcagcttcataaaccccttccaaagcgagagctattcgcccagcatgactatgagcgtgtgacccggccc ggatgcccagtcccagaggagccagactgatgccccccaggggtcttaatccccctgtatttaataacagcttcccttga ttgctagtctcagcccccctgcccccagtctggacttttgatccccgcccaggtcaccgcctgccctctaactggtactc aataaactgtagtgacgtgagaattgtc |
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| Transcript ID | habu1_s2396_g08736.t2 |
| Definition | - |
>habu1_s2396_g08736.t2 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgagaaccactggtatagggtttcctt cctgagcaggggggttgactagaggacctccaagatcccttccaactctgttattctgttctgttatgatgtaatcaaag ctccatctgtttcttatatgcgtcacatcacgatgtcataactgccattttctttttccttttttccgtatgtcccggaa ttcattaaaagacaatcatactggaatcagaatcataagattgaaaaggaccttgaagatccaaggtccaaccccaaccc atggcaggctgttggcactatatgtatacgaatatctccttcatgttggggctcagaaatctgcacagaccttcctctca gagatccggtgggaaaagaacattaccctgggagaaccacctggcttccttcactcctggtggtgtgtattttgggacct gtactgtgcagcacctgatcgacgggagacctgtgagcactcaagtgaggccaaagctttccacgattatagctccgcaa ctacaaccagtcctgtgatggccaacctgccacccagtgatgccatccccagcgggcctatgttgtcgggctttttccag ggaccacctggctcccagccatccctacatgctcaagctcccttgcacaaccccaatgcggcaatgataggaccccataa tcagccattcatgccttcacgcttccctggtgggctccgtccttccgttcgaatgccaacccagccatctatgggtgtgt ctggccaacctctgatgtccagtgcaatggatccggcaatccgatcacaagtagggcatcctaacatgggcccgatgcag cgcatgaccccaccacggggtatgacaggaatggctccgcagaattatggtggtggcataagacctcctccagggtccct ggtttgccctggtatgcccacaatgaacatagctccgggtgttcgaggatcctggccaaatataaacacaaactcggtat cctattcctcatcttctcctggcagctatgggggaggcggaggcccccctggcacccctctcatgccaagccctggagac tccaccaactctagtgaaaatatgtacatgatgaactctgttggtcctccaccaagccggcctggattctccatggggcc aagtccagaaggtccaatggcgggaatgagtgccatggaaccccatcatatgaatggatcactaggtccaggtgaaatag atgggatgcccaagaattccccgggtagcatggccagcatagctaacccaccgggcaccccacgtgatgacagcagcagt gagatgggcagcagcttcataaaccccttccaaagcgagagctattcgcccagcatgactatgagcgtgtgacccggccc ggatgcccagtcccagaggagccagactgatgccccccaggggtcttaatccccctgtatttaataacagcttcccttga ttgctagtctcagcccccctgcccccagtctggacttttgatccccgcccaggtcaccgcctgccctctaactggtactc aataaactgtagtgacgtgagaattgtc |
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| Transcript ID | habu1_s2396_g08736.t3 |
| Definition | - |
>habu1_s2396_g08736.t3 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgagaaccactggtatagggtttcctt cctgagcaggggggttgactagaggacctccaagatcccttccaactctgttattctgttctgttatgatgtaatcaaag ctccatctgtttcttatatgcgtcacatcacgatgtcataactgccattttctttttccttttttccgtatgtcccggaa ttcattaaaagttggcactatatgtatacgaatatctccttcatgttggggctcagaaatctgcacagaccttcctctca gagatccggtgggaaaagaacattaccctgggagaaccacctggcttccttcactcctggtggtggcacaactggaacac attcaagagctttcccccctcaatgcacactccttcccggaaacccccctgtccgttgcggcgtctggctccagcttcta cacatggattgtattttgggacctgtactgtgcagcacctgatcgacgggagacctgtgagcactcaagtgaggccaaag ctttccacgattatagctccgcaactacaaccagtcctgtgatggccaacctgccacccagtgatgccatccccagcggg cctatgttgtcgggctttttccagggaccacctggctcccagccatccctacatgctcaagctcccttgcacaaccccaa tgcggcaatgataggaccccataatcagccattcatgccttcacgcttccctggtgggctccgtccttccgttcgaatgc caacccagccatctatgggtgtgtctggccaacctctgatgtccagtgcaatggatccggcaatccgatcacaagtaggg catcctaacatgggcccgatgcagcgcatgaccccaccacggggtatgacaggaatggctccgcagaattatggtggtgg cataagacctcctccagggtccctggtttgccctggtatgcccacaatgaacatagctccgggtgttcgaggatcctggc caaatataaacacaaactcggtatcctattcctcatcttctcctggcagctatgggggaggcggaggcccccctggcacc cctctcatgccaagccctggagactccaccaactctagtgaaaatatgtacatgatgaactctgttggtcctccaccaag ccggcctggattctccatggggccaagtccagaaggtccaatggcgggaatgagtgccatggaaccccatcatatgaatg gatcactaggtccaggtgaaatagatgggatgcccaagaattccccgggtagcatggccagcatagctaacccaccgggc accccacgtgatgacagcagcagtgagatgggcagcagcttcataaaccccttccaaagcgagagctattcgcccagcat gactatgagcgtgtgacccggcccggatgcccagtcccagaggagccagactgatgccccccaggggtcttaatccccct gtatttaataacagcttcccttgattgctagtctcagcccccctgcccccagtctggacttttgatccccgcccaggtca ccgcctgccctctaactggtactcaataaactgtagtgacgtgagaattgtc |
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Protein
| Protein ID | habu1_s2396_g08736.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08736.t1 MSRNSLKDNHTGIRIIRLKRTLKIQGPTPTHGRLLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCV FWDLYCAAPDRRETCEHSSEAKAFHDYSSATTTSPVMANLPPSDAIPSGPMLSGFFQGPPGSQPSLHAQAPLHNPNAAMI GPHNQPFMPSRFPGGLRPSVRMPTQPSMGVSGQPLMSSAMDPAIRSQVGHPNMGPMQRMTPPRGMTGMAPQNYGGGIRPP PGSLVCPGMPTMNIAPGVRGSWPNINTNSVSYSSSSPGSYGGGGGPPGTPLMPSPGDSTNSSENMYMMNSVGPPPSRPGF SMGPSPEGPMAGMSAMEPHHMNGSLGPGEIDGMPKNSPGSMASIANPPGTPRDDSSSEMGSSFINPFQSESYSPSMTMSV |
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| Protein ID | habu1_s2396_g08736.t2 |
| Definition | - |
>habu1_s2396_g08736.t2 MSRNSLKDNHTGIRIIRLKRTLKIQGPTPTHGRLLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCV FWDLYCAAPDRRETCEHSSEAKAFHDYSSATTTSPVMANLPPSDAIPSGPMLSGFFQGPPGSQPSLHAQAPLHNPNAAMI GPHNQPFMPSRFPGGLRPSVRMPTQPSMGVSGQPLMSSAMDPAIRSQVGHPNMGPMQRMTPPRGMTGMAPQNYGGGIRPP PGSLVCPGMPTMNIAPGVRGSWPNINTNSVSYSSSSPGSYGGGGGPPGTPLMPSPGDSTNSSENMYMMNSVGPPPSRPGF SMGPSPEGPMAGMSAMEPHHMNGSLGPGEIDGMPKNSPGSMASIANPPGTPRDDSSSEMGSSFINPFQSESYSPSMTMSV |
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| Protein ID | habu1_s2396_g08736.t3 |
| Definition | - |
>habu1_s2396_g08736.t3 MSRNSLKVGTICIRISPSCWGSEICTDLPLRDPVGKEHYPGRTTWLPSLLVVAQLEHIQELSPLNAHSFPETPLSVAASG SSFYTWIVFWDLYCAAPDRRETCEHSSEAKAFHDYSSATTTSPVMANLPPSDAIPSGPMLSGFFQGPPGSQPSLHAQAPL HNPNAAMIGPHNQPFMPSRFPGGLRPSVRMPTQPSMGVSGQPLMSSAMDPAIRSQVGHPNMGPMQRMTPPRGMTGMAPQN YGGGIRPPPGSLVCPGMPTMNIAPGVRGSWPNINTNSVSYSSSSPGSYGGGGGPPGTPLMPSPGDSTNSSENMYMMNSVG PPPSRPGFSMGPSPEGPMAGMSAMEPHHMNGSLGPGEIDGMPKNSPGSMASIANPPGTPRDDSSSEMGSSFINPFQSESY SPSMTMSV |
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