Gene
| Gene Model ID | habu1_s2396_g08738 |
|---|---|
| Locus | habu1_scaffold2396 : 420446 ... 476535 : - |
| To GenomeBrowser | habu1_scaffold2396:420446..476535 |
| Genes list of scaffold | habu1_scaffold2396 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna polymerase ii elongation factor ell | GO:0003746 GO:0005840 GO:0006368 GO:0006383 GO:0006448 GO:0008023 GO:0009301 GO:0016604 GO:0045893 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2396_g08738.t1 | 1 | 1 | ELL | 6 | 284 | 0.0 | 358.4 | 0.0 | 0.0 | 358.4 |
| habu1_s2396_g08738.t1 | 1 | 1 | Occludin_ELL | 493 | 594 | 1.1e-36 | 125.6 | 2.9e-40 | 1.1e-36 | 125.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2396_g08738.t1 | gi|602658216|ref|XP_007434815.1| | PREDICTED: RNA polymerase II elongation factor ELL-like [Python bivittatus] | 0.0 |
| habu1_s2396_g08738.t1 | gi|530564965|ref|XP_005279053.1| | PREDICTED: RNA polymerase II elongation factor ELL [Chrysemys picta bellii] | 0.0 |
| habu1_s2396_g08738.t1 | gi|543377007|ref|XP_005531710.1| | PREDICTED: RNA polymerase II elongation factor ELL [Pseudopodoces humilis] | 0.0 |
| habu1_s2396_g08738.t1 | gi|61098133|ref|NP_001012865.1| | RNA polymerase II elongation factor ELL [Gallus gallus] | 0.0 |
| habu1_s2396_g08738.t1 | gi|729731394|ref|XP_010561558.1| | PREDICTED: RNA polymerase II elongation factor ELL [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.7 |
| Venom grand-1 | 4.5 |
| Pit, infrared sensing | 4.9 |
| Nose | 5.9 |
| Brain-1 | 3.4 |
| Eye | 6.6 |
| fetal fibroblast | 8.4 |
| venom gland-2 | 9.0 |
| Brain-2 | 3.2 |
| Spleen | 6.9 |
| Lung | 7.6 |
| Liver | 13.8 |
| Kidney | 11.0 |
| Pancreas | 11.2 |
| Small intestine | 7.1 |
| Large intestine | 4.6 |
| Stomach | 5.2 |
| heart | 5.3 |
| ovary | 80.7 |
| cheek muscle | 10.9 |
Transcript
| Transcript ID | habu1_s2396_g08738.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08738.t1 ccataatggttgagggggcgtgtcccaggggcttccgccgccaccgccgcggagattcccaagatggcggcactggctga gagggggtacgcgctgtcctgcgggcgcctcggccgcggcacacgagtctctgtcttccacgtcaagctgactgaatcgg ccctgcgagccttcgaggcctaccagggacgcaaggattctgtgggtttgaagccatcgatccagtttcaaggaagtcaa gggcacatctcaataccgagaccagactgcccaacaggagttcggacattttccttttatctctctaatattggcaagga cagccctcaggggagttttgattgcatccagcagtatgtgtccagcaatggtaacattcagctggattgccttggcagca tccaggacaaaatcactgtctgtgccaccgatgaatcctaccagaaggcaaagcagagcatggccctggtggaagaggag acacggagccggggcgccattgtcatcaagcctggagggcgttacgttggaaagaccgttaagatgcgtaagcctgcacc aggggtttccgacacggttccctcacggatacgcccaacacctgtcaacctcgccagtgccatcaggaagggcaatagtg ccgtctcccagaggcctttcaaagatcgggtgatgcacttgctggctctcaagccttataagaaaccagaactcctcctt aggttgcaaaaggatggcctttctctgcaagataaggattccttggacagcctcttgcagcaggttgcaaacgtgaacgc caaagacagcacatgcaccctgaaagattatctttacaaagaggtgcagaaggactggcccggctactcagaaggagacc aacaactgctgaagaggatcctcttccggaaactctgcccaccacagaatcccagctgcgtccctgagaattctgctccc agccccccaagggacaccgcaaacgtttcctcctcccctccccagaagcgacccctggacttcattgaccccctcgccaa caaaaagccaaggatctctcactgtgcccaaaggactcagcccactttcaacggcaaactcagctctgccaatgggaagg agacctctttgcccaccatggtggcggctgattcagtcagttctagctctcttttgcccactctggagctacctaggcct cacgacccacttgctgatgttagcaatgatctaaaccataacggcaaagactttgagatggcagagccggccgaaaggcg gacagcaagccggtcggccgcagccccagcccagacgagcaaacacaattgtgttccgcactcaaaatccaggaagaaga aacataaggaacgagaaaggaaggaggagcagcaacaggtccacgagaagccaaactgtgaactaaagaagggtggctcc aaaatgagcccctcacaagacagcgcaggtttaaacaggacgtgcaacagctccagtgtcccatcttctacatcagggag gccagactacttgctaaaatacggtgccatctcttcctcggagcaacgtcagagctacaagaatgatttcaacgcggagt acggcgagtatcgcgacctccatgctcgtattgagcggataacccgacggttcatgcagctggattcagaactaaagcaa ctatctcagggctcagaagaatacaagattatccacgatcagatcttgcaagaataccgaaaaattaaaaagactaatcc aaattacagccaggagaagaaccgctgtgaatatctccacaacaaactggcccatatcaaaaaactgatcgctgaatacg accaacagcagtttcagtcttggcactgagcctggggggggctgagcgagacacccagatggacgtcaacctgtgaacaa gtcccacagcgagggagaagtcagtctccagcttcctgggctcaaatgactcaaggatttaatccccgggagaagtccat cactgtactgtacacacccaggaaccaatgtggcttaatctcagcattttaaactctgtctcttcccagatattaaaaaa acaaaaaaaaaaccagttaaagaaaggaaagtttgcttattcttagatgccaacaaatgagccttcctccccaagaattg actgctcttattctccccacacacctccaaatgcaggttcagtttagagtcggaagcaaagggttgtctgggctctgttg caaattctaccagctgggggaagagctcgtgttcctggggtggaagggaacaactccatatacaaacctgtctgtccgct gtccattaaattcttgcataactcactgcttt |
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Protein
| Protein ID | habu1_s2396_g08738.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08738.t1 MAALAERGYALSCGRLGRGTRVSVFHVKLTESALRAFEAYQGRKDSVGLKPSIQFQGSQGHISIPRPDCPTGVRTFSFYL SNIGKDSPQGSFDCIQQYVSSNGNIQLDCLGSIQDKITVCATDESYQKAKQSMALVEEETRSRGAIVIKPGGRYVGKTVK MRKPAPGVSDTVPSRIRPTPVNLASAIRKGNSAVSQRPFKDRVMHLLALKPYKKPELLLRLQKDGLSLQDKDSLDSLLQQ VANVNAKDSTCTLKDYLYKEVQKDWPGYSEGDQQLLKRILFRKLCPPQNPSCVPENSAPSPPRDTANVSSSPPQKRPLDF IDPLANKKPRISHCAQRTQPTFNGKLSSANGKETSLPTMVAADSVSSSSLLPTLELPRPHDPLADVSNDLNHNGKDFEMA EPAERRTASRSAAAPAQTSKHNCVPHSKSRKKKHKERERKEEQQQVHEKPNCELKKGGSKMSPSQDSAGLNRTCNSSSVP SSTSGRPDYLLKYGAISSSEQRQSYKNDFNAEYGEYRDLHARIERITRRFMQLDSELKQLSQGSEEYKIIHDQILQEYRK IKKTNPNYSQEKNRCEYLHNKLAHIKKLIAEYDQQQFQSWH |
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