Gene
| Gene Model ID | habu1_s2396_g08739 |
|---|---|
| Locus | habu1_scaffold2396 : 477816 ... 481104 : + |
| To GenomeBrowser | habu1_scaffold2396:477816..481104 |
| Genes list of scaffold | habu1_scaffold2396 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0003735 GO:0005840 GO:0006412 GO:0042254 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2396_g08739.t1 | 1 | 1 | Ribosomal_L34 | 55 | 97 | 2.6e-17 | 62.1 | 2.5e-21 | 3.7e-17 | 61.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2396_g08739.t1 | gi|602658220|ref|XP_007434817.1| | PREDICTED: uncharacterized protein LOC103051278 [Python bivittatus] | 0.0 |
| habu1_s2396_g08739.t1 | gi|591355834|ref|XP_007072221.1| | PREDICTED: 39S ribosomal protein L34, mitochondrial [Chelonia mydas] | 1.0e-28 |
| habu1_s2396_g08739.t1 | gi|530564847|ref|XP_005278997.1| | PREDICTED: 39S ribosomal protein L34, mitochondrial [Chrysemys picta bellii] | 5.0e-28 |
| habu1_s2396_g08739.t1 | gi|699698705|ref|XP_009890684.1| | PREDICTED: 39S ribosomal protein L34, mitochondrial [Charadrius vociferus] | 6.0e-27 |
| habu1_s2396_g08739.t1 | gi|698404141|ref|XP_009809574.1| | PREDICTED: 39S ribosomal protein L34, mitochondrial, partial [Gavia stellata] | 2.0e-26 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.0 |
| Venom grand-1 | 15.5 |
| Pit, infrared sensing | 15.8 |
| Nose | 12.6 |
| Brain-1 | 6.2 |
| Eye | 8.0 |
| fetal fibroblast | 28.8 |
| venom gland-2 | 36.8 |
| Brain-2 | 6.3 |
| Spleen | 10.2 |
| Lung | 9.0 |
| Liver | 18.3 |
| Kidney | 22.5 |
| Pancreas | 19.0 |
| Small intestine | 16.6 |
| Large intestine | 12.0 |
| Stomach | 26.9 |
| heart | 39.1 |
| ovary | 49.3 |
| cheek muscle | 40.2 |
Transcript
| Transcript ID | habu1_s2396_g08739.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08739.t1 aatcgcctcccctgctgcttaaccttttcgtttgactccttatagcacgaaccgcaaggacttcagtttcaagaaggagc aagcaacaggaactcccccttctttgggaagggtgccacgactgaggaggccctactcaggtagccacccatttgttcgt agatttctgctgttggtgcacaaagtatgacctctctcttttggcagcgtcgaatctcgtctgctttttccaccccatgg caacagattcttaactccttttggtcagcagagtctgccagtgccttccaaagcattcctaagccagttgtgccctggaa ctaccagcagattcgtccaagagcccggggcaatgagtaccagccatcaaatatcaagcgaaagcacaaacatggatgga ttcgacgtatccgcacagctaaggggattgaagtgatccttcgaagaatgctgaaaggcaggaaatctctgagtcattaa aattgatgctggtgagaccctttcaaacaaagttggaaacttgacacattcgttctttttcttgctagaaaatgctacaa ccatggtatatagttccacatggcatcgtttacacacgggcgattatagtggttcctattttggttgtgaatctaaaatt tctccaagaaggaatataaacctgtttcaaacatcaaaataaacatgtccttttgttttgttttt |
|
Protein
| Protein ID | habu1_s2396_g08739.t1 |
|---|---|
| Definition | - |
>habu1_s2396_g08739.t1 MTSLFWQRRISSAFSTPWQQILNSFWSAESASAFQSIPKPVVPWNYQQIRPRARGNEYQPSNIKRKHKHGWIRRIRTAKG IEVILRRMLKGRKSLSH |
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