Gene
| Gene Model ID | habu1_s2440_g08896 |
|---|---|
| Locus | habu1_scaffold2440 : 838262 ... 918732 : - |
| To GenomeBrowser | habu1_scaffold2440:838262..918732 |
| Genes list of scaffold | habu1_scaffold2440 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrin beta-5 | GO:0004872 GO:0005178 GO:0005925 GO:0007160 GO:0007179 GO:0007229 GO:0009986 GO:0031252 GO:0034684 GO:0035987 GO:0043149 GO:0070062 GO:0090136 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2440_g08896.t1 | 1 | 1 | Integrin_beta | 39 | 467 | 0.0 | 603.1 | 0.0 | 0.0 | 602.6 |
| habu1_s2440_g08896.t1 | 1 | 1 | Integrin_B_tail | 639 | 723 | 1.4e-17 | 63.9 | 3.7e-21 | 1.4e-17 | 63.9 |
| habu1_s2440_g08896.t1 | 1 | 1 | Integrin_b_cyt | 747 | 793 | 7.2e-19 | 66.9 | 4.2e-22 | 1.6e-18 | 65.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2440_g08896.t1 | gi|602646522|ref|XP_007429692.1| | PREDICTED: integrin beta-5 [Python bivittatus] | 0.0 |
| habu1_s2440_g08896.t1 | gi|637247522|ref|XP_008107650.1| | PREDICTED: integrin beta-5 [Anolis carolinensis] | 0.0 |
| habu1_s2440_g08896.t1 | gi|530566685|ref|XP_005279880.1| | PREDICTED: integrin beta-5 [Chrysemys picta bellii] | 0.0 |
| habu1_s2440_g08896.t1 | gi|591364437|ref|XP_007057118.1| | PREDICTED: integrin beta-5 [Chelonia mydas] | 0.0 |
| habu1_s2440_g08896.t1 | gi|529427621|ref|XP_005233639.1| | PREDICTED: integrin beta-5 [Falco peregrinus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 14.6 |
| Venom grand-1 | 9.8 |
| Pit, infrared sensing | 13.0 |
| Nose | 4.5 |
| Brain-1 | 2.6 |
| Eye | 9.4 |
| fetal fibroblast | 14.0 |
| venom gland-2 | 2.8 |
| Brain-2 | 2.0 |
| Spleen | 5.1 |
| Lung | 12.5 |
| Liver | 2.6 |
| Kidney | 2.6 |
| Pancreas | 1.1 |
| Small intestine | 3.8 |
| Large intestine | 7.3 |
| Stomach | 5.8 |
| heart | 12.5 |
| ovary | 2.7 |
| cheek muscle | 28.4 |
Transcript
| Transcript ID | habu1_s2440_g08896.t1 |
|---|---|
| Definition | - |
>habu1_s2440_g08896.t1 attgcagcggtggcctttgttaacgactcccgccggcctttcccgaaagcgttcaggggaggcttttttactccggcctc gggggtcgtcatggccctggggagggggttcccgcggtacgccgccgcggtctgcctttggctcctctcctccttttgct ccggcgtcacaggtctcagtgtttgttcaagcggcaatgctacctcctgtgaagaatgcttgctcgttcatcccaagtgt gcttggtgctttaaagaggaatttggcaacaaaaaatccatcacttcaaggtgtgacttcattgagcatctcatcgccaa tggttgtgcagggcattttgagagtaaaaaaagcagtgttaatatagtaaaaaaccttccactgagcagtaagagctcta gtggttctaatccagatgtgatccaaataatgcctcaaaagatctctctgaatctgcggcctggtgacccagcctctttc catgtgcaggttcgacaggtagaggattatcccgtggatttgtattatttgatggatctctccctctccatgaaggatga tctggacaccattcggaacttgggaactaagctggctgaagaaatgggaaagctcaccagcaatttccggcttggtttcg gctcttttgtagacaagaacatttctcccttctcctacacagccccaagataccaaaataacccctgtactggatataag ttattcccaaattgtgtcccatcctttgggttccgccatcttttatccctcactgataaaattgatagattcaatgaaga agttcagaaacagaaggtttcccgcaacagagatgctccagagggtggcttagatgcaatcttgcaagctgctgtgtgtg aaaaagaaattgggtggcggaaggaggcttcgcacttgctggtcttcactactgatgatgtcccacacattgcgctggat ggaaagctgggcggtttggtgcagccacatgatgggctgtgtcacctgaatgaggccaacgaatacacagcgtccaatca gctggattatccgtcacttgcacttcttggagaaaaattagctgaaaacaacattcatgttatttttgcagtgaccaaaa atcactatatgctttacaagaatctcacggccctaattcctggaacaacggtcgagattttgtatcaagactcccgaaat attatccagcttatagtcaaggcctacaatagtattagatcaaaagtagagttaactgtccgggatagtcctaatgacat taacttggctttcacagccacatgtcaagatggttcatcatatcctggagccaggaagtgtggagatcttcaaataggag acacggtgtcctttgagatagcagtagaggcttggacatgcccagctgagaacatctcacacaccttcactatcaaacca gattggtttcgggacactgtagaggtgaccgtttcttacaactgcacatgtggatgtaccaaacagatagagcacaacag cagtaaatgtagtggaaatggcacccatgtgtgtggattatgtgattgtaacccaggccatgtaggagccaagtgtgaat gcgaggaaggagacagtggggccacgtaccacaacatgtgccgagaagctgaagggaaacgtatctgcagtggccgtggg gagtgctcctgccaccgctgtgtgtgctacaaaagtgaatttggcaggatctacgggttcttttgtgagtgtgatgactt ctcctgtccaagatataagggctttctctgctcaggtcacggagaatgtcactgcggggaatgtaagtgccatcctggct atattggggacaactgcaactgctcaacggacacaggccggtgtctttctaatgatggccaaatgtgcagtggccgaggc aactgcatctgtgggaaatgccagtgcactgaacctggagcttttggggagacttgtgagaagtgtcccacctgcccggg tgtttgcagtactaaaagggactgcattgagtgtatcctgttcaactcaggaaggctggctgataaccaaacctgccaaa aacactgccgggatgaaattataacacgagtagattttcttaaaaccgatgaccctaattcaatcttatgtgcttatccg gtgaaggattgtgtaatgaaattcacatactcagaactcaccaatggaaagacaaatatcagtgttctcaaggaaccaga gtgtagtactgcccctgatgtcatgacgatcttacttgctgtagttggcagtattgtgcttctgggcattgtccttttgg caatctggaagctgttggttactattcacgacagacgggaatttgccaaattccagagtgagcgttcccgggcaagatac gaaatggctacaaatcctctttaccgcaagcccatctcctcacatagtttagacttcacattcaacaagctcaacaggac ctataatggtaccattgactgatgggattactctggtctgaagagaaaaaaaatggaatgtttgataactgcttggcttc cttcttcagtacttgtcaaagggaagaggaagcccttggcagctgcacaaaccttgaataatgccacaaatagccggaga cagcttctagttgcatgctaaggacaaatggccagcagccaacgtactcttcagatttgtaactcaaagccattctgatg tacttggaaccaggccttgctgatttgagactcttctgatgtggactctttggaagcgcctacagactgaacaatatacc atttaacagtttcatccatattcagtgggcaaagatgtgcagtccccaggtcagagggatgttttgttgctgacaatttc tagggggaaaaaaatctagcaatggagagcttgatggtaaaaactgttaaaaagatccctatgtaatgcagtctttagag taatttttataaaaaataaataaaacaattgcatatacaaatatgt |
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Protein
| Protein ID | habu1_s2440_g08896.t1 |
|---|---|
| Definition | - |
>habu1_s2440_g08896.t1 MALGRGFPRYAAAVCLWLLSSFCSGVTGLSVCSSGNATSCEECLLVHPKCAWCFKEEFGNKKSITSRCDFIEHLIANGCA GHFESKKSSVNIVKNLPLSSKSSSGSNPDVIQIMPQKISLNLRPGDPASFHVQVRQVEDYPVDLYYLMDLSLSMKDDLDT IRNLGTKLAEEMGKLTSNFRLGFGSFVDKNISPFSYTAPRYQNNPCTGYKLFPNCVPSFGFRHLLSLTDKIDRFNEEVQK QKVSRNRDAPEGGLDAILQAAVCEKEIGWRKEASHLLVFTTDDVPHIALDGKLGGLVQPHDGLCHLNEANEYTASNQLDY PSLALLGEKLAENNIHVIFAVTKNHYMLYKNLTALIPGTTVEILYQDSRNIIQLIVKAYNSIRSKVELTVRDSPNDINLA FTATCQDGSSYPGARKCGDLQIGDTVSFEIAVEAWTCPAENISHTFTIKPDWFRDTVEVTVSYNCTCGCTKQIEHNSSKC SGNGTHVCGLCDCNPGHVGAKCECEEGDSGATYHNMCREAEGKRICSGRGECSCHRCVCYKSEFGRIYGFFCECDDFSCP RYKGFLCSGHGECHCGECKCHPGYIGDNCNCSTDTGRCLSNDGQMCSGRGNCICGKCQCTEPGAFGETCEKCPTCPGVCS TKRDCIECILFNSGRLADNQTCQKHCRDEIITRVDFLKTDDPNSILCAYPVKDCVMKFTYSELTNGKTNISVLKEPECST APDVMTILLAVVGSIVLLGIVLLAIWKLLVTIHDRREFAKFQSERSRARYEMATNPLYRKPISSHSLDFTFNKLNRTYNG TID |
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