Gene
| Gene Model ID | habu1_s2447_g08975 |
|---|---|
| Locus | habu1_scaffold2447 : 1155814 ... 1174136 : - |
| To GenomeBrowser | habu1_scaffold2447:1155814..1174136 |
| Genes list of scaffold | habu1_scaffold2447 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine-rich repeat and coiled-coil domain-containing protein 1 isoform x1 | GO:0005634 GO:0005737 GO:0005813 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2447_g08975.t1 | 4 | 1 | LRR_8 | 28 | 62 | 4.9e-15 | 55.0 | 5.4e-07 | 0.0016 | 18.1 |
| habu1_s2447_g08975.t1 | 4 | 2 | LRR_8 | 29 | 84 | 4.9e-15 | 55.0 | 2.5e-09 | 7.3e-06 | 25.6 |
| habu1_s2447_g08975.t1 | 2 | 1 | LRR_4 | 29 | 62 | 1.0e-10 | 40.9 | 2.0e-07 | 0.00059 | 19.3 |
| habu1_s2447_g08975.t1 | 4 | 3 | LRR_8 | 51 | 106 | 4.9e-15 | 55.0 | 1.4e-11 | 4.0e-08 | 32.8 |
| habu1_s2447_g08975.t1 | 4 | 4 | LRR_8 | 73 | 110 | 4.9e-15 | 55.0 | 9.7e-09 | 2.9e-05 | 23.7 |
| habu1_s2447_g08975.t1 | 2 | 2 | LRR_4 | 73 | 112 | 1.0e-10 | 40.9 | 4.6e-12 | 1.4e-08 | 34.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2447_g08975.t1 | gi|602653900|ref|XP_007432801.1| | PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1 [Python bivittatus] | 0.0 |
| habu1_s2447_g08975.t1 | gi|637288453|ref|XP_003219589.2| | PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s2447_g08975.t1 | gi|637288457|ref|XP_008106637.1| | PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s2447_g08975.t1 | gi|530619518|ref|XP_005299451.1| | PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2447_g08975.t1 | gi|558115983|ref|XP_006113050.1| | PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.4 |
| Venom grand-1 | 1.0 |
| Pit, infrared sensing | 1.7 |
| Nose | 1.8 |
| Brain-1 | 0.8 |
| Eye | 0.9 |
| fetal fibroblast | 4.4 |
| venom gland-2 | 0.9 |
| Brain-2 | 1.0 |
| Spleen | 2.0 |
| Lung | 2.2 |
| Liver | 1.7 |
| Kidney | 1.5 |
| Pancreas | 1.7 |
| Small intestine | 1.7 |
| Large intestine | 2.1 |
| Stomach | 1.9 |
| heart | 1.5 |
| ovary | 30.3 |
| cheek muscle | 1.5 |
Transcript
| Transcript ID | habu1_s2447_g08975.t1 |
|---|---|
| Definition | - |
>habu1_s2447_g08975.t1 gggttcaaagcggagggcggcaagcaccgcggttgaggctggggagggggtcgctaagcggagcaggatggcggcggtgt gcgcaacttcaggggagctcagcctaatggataaaggcattaagagtttagcagagctacctttaagttcagaacttcac acactcaacttgcattgtaacctgatctccagaattgaaagtcttgatcacctgttgaacttacaacatctagatctgtc atcaaatcgcatacattggattgaagggctaagttgccttgcaaacctccgtaccttaaatttggcttgcaacttgataa ccaaagttgaagggctggaaaatctatataatttaactaaactgaatttatcttacaaccgtatagatgacctttcagga cttctacatcttcgaggacccaactataaaattaatcatattgaacttcacagcaactgtgtaaataacattaaccattt acttcaatgccttagtggactgcaatacttgactaatcttactttggagaaaaatggaaaaagtaatccagtgtgtgcca aaataggctacagagagattctccttcaggctttacctcaactatccatcttggatgggaagaatatatttggtgaaccg gtcaacttaatggaaccaaactcatctgatttgaagtgtttggaagatctcttaagctgtttagtttcatccagttatac agatgaagaagagacttatgttaatttgccaataataacaccacatattgatcaagtattagcccagtttcgccagaggg caaagatgtcagcttggactaccactagttcttccactgaaataatgtcatcttctgagccagaaaaaaataaatttgat aatgactcaaggataaaaaaactagaagaacagatatctcacctcctgcaaaaggttactaattcttcaaaagctgatgt gactgtcaaagccaaaaaagaaactgattttgcctcagagagtggtagtgaaagtggaaaagagaatagaaaaacaatta aaaggagcaagttgcctaattatcgaaaaagcactttatcaaccaagttcccttctcaaaggggcaaactgtcagccaga gaacaagagaaacatttcatcaagtctaagtttcaagaatcccacatcaaagaggaagaaaattcaagcccagcttccga aattgcaagcttgaagaaattgggtgggcagaaaagtcaaatgaaaaaactaaaaaatgtggatactggtattcaagaag aattcacttacagggcactaattcaagaactagatcaggagagagagaagcgatggaaagctgaacaaactgaaaagaaa ctgagtgaaagcatcaagcacctgcagaaccaggccaaagaagaaaaagatattcaaagtctagctgtttacactacaga taggttaaaggaactgattttgagagaacgaagtgcaaagacaagacttcagactgatattcagcaactgaaagaagaag ctgaaaaacttggtaaggagctagagcggtccaaacacaaagaaaaggatcaacaaaaggcactacagactttagaagaa gctctctccatgttggagtcacaaaaagcacagcaacaagcttcagagatgaaaaggattcaaagtgcagaacttaaagc atcagcagccgagagagaagtacaattacttcgaatatctcttcagcaacaaaaagacaaggtggaacaagtccacgaac tcctaatgctaagagagcaggaacacagaaaagaactggaaaccagagttacattaaatggctcagaatttcaagaagct ctgtcaaaagaagtagctagagaagaacagagacataaagatcatattaaagaactacaagaaaaacgtcatctattaaa ccagaaatataaggatctagaggatgagttccgtgtagccttaactatagaagccaaaagattttcagaggttaaagaag gctttgatagactcactgctgagctggcagagcataaacaagttcttctccactctcagcaaaaggaaaagcaatctgct aatttgatccatgagctgacatctgtggtgaaagaacaaaaagataaaatcacagaattaatcaaatcaaagcaagacat agtttacaacttgaaaagtcggatacaaactcttgaaaatatggtagaggaagaccaacaaaagacaattcaacttgagc ttcttaagcaggaaaagtcaaaacttatctcccatctaacagctcaggagtctgtaattgatggattaaaagcagaaaga aaaatatggggagaggagctggcacagcaaggagcttcccttgctcaagatcggggaaaattggaagccaaagtagaagt tctaactagtgagactgaagctttgaaaaaacaaaatgaatctctcaatgatggtttgcagattaagtctaaaattgtgg aagatcaaaccgaaaccattagaaagctgaaagaagcctcacagaaccgagatgagcaaataagaaaactccgtgaagac aatattgaaacacagaagagacttcaagtacaactacaggaaaaagatgcacagttagataatttattggaaaaattaga aaggcaaaatgagagaaaagaggaacttaaacatcaattgcaagaaaaggatgctgagctgaatgatatcaaggaatcct atagtgtgatgaataaaaaatggcaagataaaggtggattgctgagcaagttggaagcacaagttaaacaaatgaaagaa aactttgatatcagggagcagcagttgagagaggaaagagataaaagtcttcaagctcagaagattatgatggaaaaact tcattctatggatgatgctttccgaagacagcatgaatcaaccattgcagcacatcaagcagaactgctacaactagcaa atgaaaagcagaaacaaattgcggcagccaatgaaaaggtttaccaggttgaagaagaaatgcgtcagttactacaagaa actgcaaagaataaaaaggctatggaagagaaaataaaatggctaacagttgctttaagtgatattcagcaaggactctg agatacatctatagcacacttggcatttgtaaccatcattacagattgtttgatgataggaaatgctgcctgttgcccta agttatagttgtactttatgtaaatattttcagaataaaagtttccttttgttaaactatcagtgacctagaaatttcca tatgaaattcactacatcaaatacgaaaaagtttccttccattaaagctaaaaagtataatatattagaattagaagatt ggaagtgattaaaaggatagaagttcattcattaaaggttatatagccttaaatatgacaatattgcatcaattggatct aggtattacaatcctatgtttgactgattattctgaaattaattttatgaaaatcattgggacttactgtcaataagctc aaggagcaaggttggcaatccctgaaactaaagtgcctagagttgctctgtgagtaaaatgggtggtctctaaatttgat atataaataagtaaaataaagtggaaaaaattacttgtttgt |
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Protein
| Protein ID | habu1_s2447_g08975.t1 |
|---|---|
| Definition | - |
>habu1_s2447_g08975.t1 MAAVCATSGELSLMDKGIKSLAELPLSSELHTLNLHCNLISRIESLDHLLNLQHLDLSSNRIHWIEGLSCLANLRTLNLA CNLITKVEGLENLYNLTKLNLSYNRIDDLSGLLHLRGPNYKINHIELHSNCVNNINHLLQCLSGLQYLTNLTLEKNGKSN PVCAKIGYREILLQALPQLSILDGKNIFGEPVNLMEPNSSDLKCLEDLLSCLVSSSYTDEEETYVNLPIITPHIDQVLAQ FRQRAKMSAWTTTSSSTEIMSSSEPEKNKFDNDSRIKKLEEQISHLLQKVTNSSKADVTVKAKKETDFASESGSESGKEN RKTIKRSKLPNYRKSTLSTKFPSQRGKLSAREQEKHFIKSKFQESHIKEEENSSPASEIASLKKLGGQKSQMKKLKNVDT GIQEEFTYRALIQELDQEREKRWKAEQTEKKLSESIKHLQNQAKEEKDIQSLAVYTTDRLKELILRERSAKTRLQTDIQQ LKEEAEKLGKELERSKHKEKDQQKALQTLEEALSMLESQKAQQQASEMKRIQSAELKASAAEREVQLLRISLQQQKDKVE QVHELLMLREQEHRKELETRVTLNGSEFQEALSKEVAREEQRHKDHIKELQEKRHLLNQKYKDLEDEFRVALTIEAKRFS EVKEGFDRLTAELAEHKQVLLHSQQKEKQSANLIHELTSVVKEQKDKITELIKSKQDIVYNLKSRIQTLENMVEEDQQKT IQLELLKQEKSKLISHLTAQESVIDGLKAERKIWGEELAQQGASLAQDRGKLEAKVEVLTSETEALKKQNESLNDGLQIK SKIVEDQTETIRKLKEASQNRDEQIRKLREDNIETQKRLQVQLQEKDAQLDNLLEKLERQNERKEELKHQLQEKDAELND IKESYSVMNKKWQDKGGLLSKLEAQVKQMKENFDIREQQLREERDKSLQAQKIMMEKLHSMDDAFRRQHESTIAAHQAEL LQLANEKQKQIAAANEKVYQVEEEMRQLLQETAKNKKAMEEKIKWLTVALSDIQQGL |
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