Gene
| Gene Model ID | habu1_s2453_g08998 |
|---|---|
| Locus | habu1_scaffold2453 : 2436 ... 11967 : + |
| To GenomeBrowser | habu1_scaffold2453:2436..11967 |
| Genes list of scaffold | habu1_scaffold2453 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-43 | GO:0003924 GO:0005525 GO:0005794 GO:0006886 GO:0006913 GO:0007030 GO:0007264 GO:0008152 GO:0016020 GO:0019068 GO:0035526 GO:0045335 GO:0070062 GO:0090382 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2453_g08998.t1 | 1 | 1 | Arf | 21 | 178 | 2.4e-14 | 52.9 | 2.5e-17 | 3.4e-14 | 52.4 |
| habu1_s2453_g08998.t1 | 1 | 1 | Ras | 22 | 182 | 0.0 | 193.6 | 0.0 | 0.0 | 193.3 |
| habu1_s2453_g08998.t1 | 1 | 1 | Miro | 22 | 136 | 9.9e-19 | 67.9 | 1.2e-21 | 1.6e-18 | 67.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2453_g08998.t1 | gi|602642171|ref|XP_007427878.1| | PREDICTED: ras-related protein Rab-43-like [Python bivittatus] | 0.0 |
| habu1_s2453_g08998.t1 | gi|327265909|ref|XP_003217750.1| | PREDICTED: ras-related protein Rab-43 [Anolis carolinensis] | 0.0 |
| habu1_s2453_g08998.t1 | gi|530644952|ref|XP_005309146.1| | PREDICTED: ras-related protein Rab-43 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2453_g08998.t1 | gi|591363316|ref|XP_007056562.1| | PREDICTED: ras-related protein Rab-43-like, partial [Chelonia mydas] | 0.0 |
| habu1_s2453_g08998.t1 | gi|564227546|ref|XP_006258237.1| | PREDICTED: ras-related protein Rab-43-like [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.7 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.3 |
| Nose | 0.6 |
| Brain-1 | 1.2 |
| Eye | 0.3 |
| fetal fibroblast | 2.0 |
| venom gland-2 | 0.8 |
| Brain-2 | 0.9 |
| Spleen | 0.4 |
| Lung | 0.1 |
| Liver | 0.0 |
| Kidney | 1.3 |
| Pancreas | 0.6 |
| Small intestine | 2.1 |
| Large intestine | 0.4 |
| Stomach | 2.6 |
| heart | 0.4 |
| ovary | 6.9 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s2453_g08998.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g08998.t1 gggcagccgtgggagcagcgccgcggtcatgcccagctccccgtcggcgccgcccgggccggacccggaggagcactacg acttcctcttcaagctggtgctgatcggcgatgccagcgtgggcaagacgtgcctggtgcagcgcttcaagaccggggcc ttctctgagcgccagggcaacaccatcggcgtggacttcaccatgaagagcctggagatccagggcaagcgggtcaagtt acagatctgggacacggctggtcaagaaaggtttcggactataacccagagttactatcgaagcgccaatggagctattt tagcctatgacattagtaagagaggctctttccaatccattcctcgctggatcgaggatgtgaggaaatatgcaggctcc aatatagtacagttgctaatcggaaacaaatctgacctaagtgaccttcgggaggttcaactagaagaggctcagagtct ggcggaacactacgatatcagctgtgccatagagacttctgcaaaggactccaataacgtggaggaagcttttgtgaaga tggccacagagctcatgatgagacacggaggccccatgttcagtgagaaaaatacagacagcatcaaacttgacagcaag gatgtggtagaaggattagaaaacaacagatttgctcattcttatgagctgttatgatgaggttgcatagtactgacagt actgccagtttagatctttctccatacataccgtacttcagtaattattatacaaagattagatcttgcttcagttattc attgcaaggacaagaaaattaaagaccagattttagagaatgtta |
|
Protein
| Protein ID | habu1_s2453_g08998.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g08998.t1 MPSSPSAPPGPDPEEHYDFLFKLVLIGDASVGKTCLVQRFKTGAFSERQGNTIGVDFTMKSLEIQGKRVKLQIWDTAGQE RFRTITQSYYRSANGAILAYDISKRGSFQSIPRWIEDVRKYAGSNIVQLLIGNKSDLSDLREVQLEEAQSLAEHYDISCA IETSAKDSNNVEEAFVKMATELMMRHGGPMFSEKNTDSIKLDSKDVVEGLENNRFAHSYELL |
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