Gene
| Gene Model ID | habu1_s2453_g09001 |
|---|---|
| Locus | habu1_scaffold2453 : 71353 ... 79195 : - |
| To GenomeBrowser | habu1_scaffold2453:71353..79195 |
| Genes list of scaffold | habu1_scaffold2453 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cellular nucleic acid-binding protein isoform x2 | GO:0003697 GO:0003727 GO:0005634 GO:0005783 GO:0005829 GO:0008270 GO:0008284 GO:0044822 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2453_g09001.t2 | 1 | 1 | zf-CCHC_3 | 93 | 110 | 1.3e-06 | 27.9 | 7.7e-07 | 0.0029 | 17.3 |
| habu1_s2453_g09001.t2 | 2 | 1 | zf-CCHC_5 | 94 | 109 | 8.8e-08 | 31.5 | 1.7e-06 | 0.0062 | 15.9 |
| habu1_s2453_g09001.t2 | 7 | 1 | zf-CCHC | 95 | 110 | 0.0 | 168.5 | 2.5e-11 | 9.2e-08 | 31.6 |
| habu1_s2453_g09001.t2 | 3 | 1 | zf-CCHC_4 | 96 | 110 | 1.1e-12 | 47.4 | 1.4e-06 | 0.0051 | 16.4 |
| habu1_s2453_g09001.t2 | 3 | 2 | zf-CCHC_4 | 133 | 152 | 1.1e-12 | 47.4 | 7.6e-07 | 0.0028 | 17.2 |
| habu1_s2453_g09001.t2 | 7 | 2 | zf-CCHC | 136 | 151 | 0.0 | 168.5 | 1.6e-10 | 5.8e-07 | 29.1 |
| habu1_s2453_g09001.t2 | 2 | 2 | zf-CCHC_5 | 154 | 171 | 8.8e-08 | 31.5 | 2.3e-06 | 0.0085 | 15.5 |
| habu1_s2453_g09001.t2 | 7 | 3 | zf-CCHC | 156 | 172 | 0.0 | 168.5 | 1.9e-10 | 6.9e-07 | 28.8 |
| habu1_s2453_g09001.t2 | 3 | 3 | zf-CCHC_4 | 156 | 171 | 1.1e-12 | 47.4 | 9.3e-06 | 0.035 | 13.7 |
| habu1_s2453_g09001.t2 | 7 | 4 | zf-CCHC | 180 | 196 | 0.0 | 168.5 | 3.4e-11 | 1.3e-07 | 31.2 |
| habu1_s2453_g09001.t2 | 7 | 5 | zf-CCHC | 200 | 217 | 0.0 | 168.5 | 1.3e-09 | 4.9e-06 | 26.2 |
| habu1_s2453_g09001.t2 | 7 | 6 | zf-CCHC | 219 | 234 | 0.0 | 168.5 | 2.1e-09 | 7.9e-06 | 25.5 |
| habu1_s2453_g09001.t2 | 7 | 7 | zf-CCHC | 240 | 255 | 0.0 | 168.5 | 8.0e-11 | 3.0e-07 | 30.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2453_g09001.t2 | gi|449473367|ref|XP_002187556.2| | PREDICTED: cellular nucleic acid-binding protein isoform X3 [Taeniopygia guttata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 82.7 |
| Venom grand-1 | 295.0 |
| Pit, infrared sensing | 138.3 |
| Nose | 120.6 |
| Brain-1 | 77.2 |
| Eye | 135.6 |
| fetal fibroblast | 202.5 |
| venom gland-2 | 244.2 |
| Brain-2 | 54.9 |
| Spleen | 109.4 |
| Lung | 189.9 |
| Liver | 147.5 |
| Kidney | 135.3 |
| Pancreas | 212.1 |
| Small intestine | 120.9 |
| Large intestine | 124.6 |
| Stomach | 128.8 |
| heart | 216.5 |
| ovary | 209.2 |
| cheek muscle | 557.1 |
Transcript
| Transcript ID | habu1_s2453_g09001.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g09001.t1 gcgaaagcattcacgggttgccattggccccgcggtcgggatagagccgtgcgcagatcggcagggcgggtgtgtggggt cgtgtgcaaaccgcgtgtggcgcagccagcagggactcaacggtagcgggtgggctagtcggatctcgcgcgtggactaa ggaggaaaaaatctcaagccgagcggccattccggatcgagccgtcgacgggaacgaaagtccgcggaaggtagatcttg tttcagatacactgagcatctatactggaaaataattataacaatgaacctgaatgaagaaattagattaaatgaaaaga acctaattggagcaatgagcagtaacgagtgcttcaagtgtgggcgtactggccattgggctcgagaatgccccactgga attggtcgtggccgtggaatgcgaagccgtggcagaggcttccaatttatgtcatcatcacttccagacatctgttaccg ctgtggtgagtctggccatcttgccaaggactgtgatcttcaggaggatgcctgctataactgcggtagaggtggccata ttgcgaaggactgcaaggaacccaagagagagagagagcagtgctgctacaactgtggcaaacctggccacttggctcgt gactgtgatcatgcagatgagcaaaagtgttattcttgtggggaatttggacacatccagaaggactgcaccaaagtcaa atgctacaggtgtggtgaaactggccatgtagccatcaactgcagcaagactagtgaagtcaactgctatcgttgtgggg agtcaggacaccttgcacgggaatgcacaattgaggctacagcttaactgtttttcctttgtcgcccctcctttttctga ttgatggttgtattatttttctctgaatcctcttcactggccaaaggttggcagatagaggctattcccaggccagtgag ctttacttgccgtgttaaaggaggaaaggggtggaaaaatcgactttctgcatttaactacaaaaaaatgtttatgttta gtttggtagaggtgttatgtataatgctttgttaaagaaccccctttccgtgccactggtgaatagggatggatgagtgg aaagagttaagtcagaccagcaaagcctccctgggttccatggaagtgatcgcatgcaggaggaaataagctggaagtgt ctgaacttccacagtaattaattctattacaataatggccttggattgtctgacctcagtaatagttaaaacaccaagta tttatatcaggccttaccaaaagcatatagcgaagtgggataaacaaacaatgcacatgcctgttaatggccacaagagt gagggagaaattgaagtaaccgtaatacaataaatgaatgtctaatgcgaggtaac |
|
| Transcript ID | habu1_s2453_g09001.t2 |
| Definition | - |
>habu1_s2453_g09001.t2 ggcaatcctactccgaacgcgtcactagcactgctgccaaatgtcgttttcgccgactcaggtgcgccaacagggcggca gccactgcctcacaagcgacgcgcagacgctcgctaagtatcgcgataagccgcgcgcgagaaagctatttggactctcc cccccctcccttaccgtcctcgttattccagaaacagcccctcccctcggtttaggccgaagaatactggaggatattcc gccgagcggccattccggatcgagccgtcgacgggaacgaaagtccgcggaagagaacctaattggagcaatgagcagta acgagtgcttcaagtgtgggcgtactggccattgggctcgagaatgccccactggaattggtcgtggccgtggaatgcga agccgtggcagaggcttccaatttatgtcatcatcacttccagacatctgttaccgctgtggtgagtctggccatcttgc caaggactgtgatcttcaggaggatgcctgctataactgcggtagaggtggccatattgcgaaggactgcaaggaaccca agagagagagagagcagtgctgctacaactgtggcaaacctggccacttggctcgtgactgtgatcatgcagatgagcaa aagtgttattcttgtggggaatttggacacatccagaaggactgcaccaaagtcaaatgctacaggtgtggtgaaactgg ccatgtagccatcaactgcagcaagactagtgaagtcaactgctatcgttgtggggagtcaggacaccttgcacgggaat gcacaattgaggctacagcttaactgtttttcctttgtcgcccctcctttttctgattgatggttgtattatttttctct gaatcctcttcactggccaaaggttggcagatagaggctattcccaggccagtgagctttacttgccgtgttaaaggagg aaaggggtggaaaaatcgactttctgcatttaactacaaaaaaatgtttatgtttagtttggtagaggtgttatgtataa tgctttgttaaagaaccccctttccgtgccactggtgaatagggatggatgagtggaaagagttaagtcagaccagcaaa gcctccctgggttccatggaagtgatcgcatgcaggaggaaataagctggaagtgtctgaacttccacagtaattaattc tattacaataatggccttggattgtctgacctcagtaatagttaaaacaccaagtatttatatcaggccttaccaaaagc atatagcgaagtgggataaacaaacaatgcacatgcctgttaatggccacaagagtgagggagaaattgaagtaaccgta atacaataaatgaatgtctaatgcgaggtaac |
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Protein
| Protein ID | habu1_s2453_g09001.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g09001.t1 MNLNEEIRLNEKNLIGAMSSNECFKCGRTGHWARECPTGIGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQ EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINC SKTSEVNCYRCGESGHLARECTIEATA |
|
| Protein ID | habu1_s2453_g09001.t2 |
| Definition | - |
>habu1_s2453_g09001.t2 MSFSPTQVRQQGGSHCLTSDAQTLAKYRDKPRARKLFGLSPPSLTVLVIPETAPPLGLGRRILEDIPPSGHSGSSRRRER KSAEENLIGAMSSNECFKCGRTGHWARECPTGIGRGRGMRSRGRGFQFMSSSLPDICYRCGESGHLAKDCDLQEDACYNC GRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN CYRCGESGHLARECTIEATA |
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