Gene
| Gene Model ID | habu1_s2453_g09004 |
|---|---|
| Locus | habu1_scaffold2453 : 211242 ... 222295 : - |
| To GenomeBrowser | habu1_scaffold2453:211242..222295 |
| Genes list of scaffold | habu1_scaffold2453 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable e3 ubiquitin-protein ligase makorin-2 isoform x1 | GO:0005622 GO:0008152 GO:0008270 GO:0016874 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2453_g09004.t1 | 4 | 1 | zf-CCCH | 9 | 28 | 1.4e-22 | 78.8 | 1.0e-06 | 0.0017 | 17.9 |
| habu1_s2453_g09004.t1 | 4 | 2 | zf-CCCH | 36 | 57 | 1.4e-22 | 78.8 | 4.0e-10 | 6.6e-07 | 28.8 |
| habu1_s2453_g09004.t1 | 4 | 3 | zf-CCCH | 170 | 195 | 1.4e-22 | 78.8 | 1.5e-09 | 2.5e-06 | 27.0 |
| habu1_s2453_g09004.t1 | 1 | 1 | zf-RING_2 | 241 | 296 | 4.2e-07 | 29.6 | 2.6e-10 | 4.2e-07 | 29.6 |
| habu1_s2453_g09004.t1 | 1 | 1 | zf-C3HC4 | 242 | 295 | 2.2e-06 | 27.1 | 1.4e-09 | 2.2e-06 | 27.1 |
| habu1_s2453_g09004.t1 | 4 | 4 | zf-CCCH | 328 | 351 | 1.4e-22 | 78.8 | 2.2e-07 | 0.00037 | 20.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2453_g09004.t1 | gi|602637583|ref|XP_007425634.1| | PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Python bivittatus] | 0.0 |
| habu1_s2453_g09004.t1 | gi|637271701|ref|XP_003217723.2| | PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s2453_g09004.t1 | gi|637271706|ref|XP_008103424.1| | PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s2453_g09004.t1 | gi|641755235|ref|XP_005309132.2| | PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2453_g09004.t1 | gi|591363296|ref|XP_007056552.1| | PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.0 |
| Venom grand-1 | 25.6 |
| Pit, infrared sensing | 15.8 |
| Nose | 11.4 |
| Brain-1 | 15.6 |
| Eye | 15.3 |
| fetal fibroblast | 28.7 |
| venom gland-2 | 19.9 |
| Brain-2 | 14.2 |
| Spleen | 11.8 |
| Lung | 14.1 |
| Liver | 14.4 |
| Kidney | 17.3 |
| Pancreas | 17.6 |
| Small intestine | 14.0 |
| Large intestine | 13.1 |
| Stomach | 25.9 |
| heart | 24.6 |
| ovary | 52.7 |
| cheek muscle | 61.1 |
Transcript
| Transcript ID | habu1_s2453_g09004.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g09004.t1 gaggagacaccgaagcaggagcggtgccaaaggagacatgagcagcacgaaggacataacctgcaggtattttatacaag gagtatgtcgtgaaggaaataggtgtctgttttcccatgacttgtctacaagcaaacgatctactatctgcaaattctat caaaaaggacagtgtgcttacggaactcgctgcaaatatgatcatgtcaaacctctggggtcctctgcatccgggggcgc agtgggttctagacccctttacatttctgcaccaccattccaaagactcaactctccatcagagcaaaacccaattgtta ccaaaagtaaagtacatgaatctggaaaacgtgaaaagaaaactttagtgctcagggacagagacttgtgtggaaccaat gaagaaaggacaaggcccggggcagtaagtgacttggcatgttgcagtattccagctgacacaccggaaataaagcccca ttcgtatttagatgctatccgcagcgggcttgaagacgatgctgaacctggcagctcatatacatatgatgaacagttat gcccctacgcagcagctggcatgtgccagtttggggaccggtgcctctacctccatgggcaagtatgtgaaatctgtggg ttgcaagtactccatccctttgatccagaacagaggaaggcacacgagaagatgtgcatggctagctttgaacatgacat ggagaaagcttttgccttccaggcaagccaggacaaggtgtgcagtatttgcatggaagtggtttatgacaagccatccg cctcggaaagaagatttggcatcctttctaactgcaaccacacctactgtttgtcctgtatccgtcagtggaggggagtc aagcagtttgagaatcccatcatcaagtcctgtccagaatgtcgtgtgatatcagagtttgtcattcccagtgtgtactg ggtagaagatcagacaaaaaagaacgaactaattgaagcatttaagcagggggttgggagaaaagcctgcaagtattttg agcagggaaaggggacttgcccatttggggggaaatgtctgtatctccatgcttatccagacggaagacgggctgagcca gagaagccacgaaagcaactcagctcagaggggacagtccggttcctcaactctgttcgtctgtgggattttatcgaaga ccgagaaaacagaacgccgcccgtcgccaatgatgatgtatctgagattggagagctttttatgcatctttctggcacag atgctgaatctgctgctcctccctagaataccacaagatctctcccgtgtctctttcatactgatccttctgtttcttca gtaactttgtatccacaatgttagaattactgtgccatggagactgaggtcctggtgaaattctagtatgagtgtcactg tagagcaaaagtgttgaaacatcataaaatgagtgcttggaataaaagtgatagatgtaatcatgaag |
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Protein
| Protein ID | habu1_s2453_g09004.t1 |
|---|---|
| Definition | - |
>habu1_s2453_g09004.t1 MSSTKDITCRYFIQGVCREGNRCLFSHDLSTSKRSTICKFYQKGQCAYGTRCKYDHVKPLGSSASGGAVGSRPLYISAPP FQRLNSPSEQNPIVTKSKVHESGKREKKTLVLRDRDLCGTNEERTRPGAVSDLACCSIPADTPEIKPHSYLDAIRSGLED DAEPGSSYTYDEQLCPYAAAGMCQFGDRCLYLHGQVCEICGLQVLHPFDPEQRKAHEKMCMASFEHDMEKAFAFQASQDK VCSICMEVVYDKPSASERRFGILSNCNHTYCLSCIRQWRGVKQFENPIIKSCPECRVISEFVIPSVYWVEDQTKKNELIE AFKQGVGRKACKYFEQGKGTCPFGGKCLYLHAYPDGRRAEPEKPRKQLSSEGTVRFLNSVRLWDFIEDRENRTPPVANDD VSEIGELFMHLSGTDAESAAPP |
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