Gene
| Gene Model ID | habu1_s2455_g09011 |
|---|---|
| Locus | habu1_scaffold2455 : 175726 ... 244126 : + |
| To GenomeBrowser | habu1_scaffold2455:175726..244126 |
| Genes list of scaffold | habu1_scaffold2455 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription cofactor vestigial-like protein 4 isoform x1 | GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2455_g09011.t1 | 1 | 1 | VGLL4 | 34 | 257 | 0.0 | 296.9 | 0.0 | 0.0 | 296.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2455_g09011.t1 | gi|327265843|ref|XP_003217717.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s2455_g09011.t1 | gi|564237347|ref|XP_006275562.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s2455_g09011.t1 | gi|557320612|ref|XP_006033443.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s2455_g09011.t1 | gi|558136968|ref|XP_006117671.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s2455_g09011.t1 | gi|591363276|ref|XP_007056542.1| | PREDICTED: transcription cofactor vestigial-like protein 4 isoform X1 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.1 |
| Venom grand-1 | 2.2 |
| Pit, infrared sensing | 5.4 |
| Nose | 6.4 |
| Brain-1 | 3.7 |
| Eye | 3.9 |
| fetal fibroblast | 6.2 |
| venom gland-2 | 4.4 |
| Brain-2 | 4.0 |
| Spleen | 5.3 |
| Lung | 9.1 |
| Liver | 1.2 |
| Kidney | 5.6 |
| Pancreas | 2.4 |
| Small intestine | 4.8 |
| Large intestine | 4.7 |
| Stomach | 3.6 |
| heart | 5.7 |
| ovary | 8.6 |
| cheek muscle | 3.4 |
Transcript
| Transcript ID | habu1_s2455_g09011.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09011.t1 gccaagcaaggctgtccaccattttttttgtctgccatttttttgtccgccattttttcccccttttccggcgggtgcct tacctccctttggctgggccagctggtggtcggcctgctccgtctctgccgcttgccagctacgcctcggccggcgcagg gggcggaaccacgcatgcgcggcgctcccgggcagggaaagtcctcgacttacgaccggttgggtagtcctcgacttacg accggtttagtcctcgacttacgaccgatggacctgttgaattaccagtacttggacaagatgaacaacaatatcggcat tctccgccagtatgaaggtgaagctgcactacgaggagagcccaggatacagtctctccccatatctgctgctgcaacca atcacaggaccgggccgcccccaatcagcccttgcaaaaggaggttcagcatggaccaaggagatgatgatctagactgt gaaaaggaacatatacctaaaatgagtcgattgttcagtcctcatctaatgaagactgcaaatggggattaccgaaaaga acatagagaaaggagtcgtagtcccatagaacgggctgttgcaccaacaatgggccttcatgctaatcatatatatgcct caatcccaagcttaactatggagcaacctctagcactgaccaaaaacagcatggatgttattcggtctgtaagcatgact cctacaatgacgtcagtggaacggcagcagaaccgtccatctgtaatcacatgtgcctctgcaagcaatcgaaactgtaa cctttctcattgtccaattgtgcacagtggatgtggtgctgctgtgccaaccagttaccgaagaccgtctagcactactg ctgcgtgtgatccggtggtagaagaacacttccgcagaagccttggcaagaattacaaggagccagagccagtgacaaac tctgtatccatcacaggatcagtcgatgaccactttgccaaagctctcggagatacctggcttcagatcaaagctgccaa ggatggtgtgtccaatagtccagagtctgcttccaggaggggccagtcctcttctcctccttcctcccatctggtcaatc ataatcattcaccttcggttgtctcatgaacacgggaccacaagtttcttcatccaagcatgagttggtattgttttggc tgagcttgaacagtactcaaaatgaaaagcgttgggagggatgatataaaagaagataacaattcaatacat |
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Protein
| Protein ID | habu1_s2455_g09011.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09011.t1 MRGAPGQGKSSTYDRLGSPRLTTGLVLDLRPMDLLNYQYLDKMNNNIGILRQYEGEAALRGEPRIQSLPISAAATNHRTG PPPISPCKRRFSMDQGDDDLDCEKEHIPKMSRLFSPHLMKTANGDYRKEHRERSRSPIERAVAPTMGLHANHIYASIPSL TMEQPLALTKNSMDVIRSVSMTPTMTSVERQQNRPSVITCASASNRNCNLSHCPIVHSGCGAAVPTSYRRPSSTTAACDP VVEEHFRRSLGKNYKEPEPVTNSVSITGSVDDHFAKALGDTWLQIKAAKDGVSNSPESASRRGQSSSPPSSHLVNHNHSP SVVS |
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