Gene
| Gene Model ID | habu1_s2455_g09014 |
|---|---|
| Locus | habu1_scaffold2455 : 462732 ... 555851 : - |
| To GenomeBrowser | habu1_scaffold2455:462732..555851 |
| Genes list of scaffold | habu1_scaffold2455 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sodium- and chloride-dependent gaba transporter 1 | GO:0005328 GO:0005332 GO:0005887 GO:0006814 GO:0006836 GO:0015812 GO:0015846 GO:0030424 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2455_g09014.t1 | 1 | 1 | SNF | 253 | 767 | 0.0 | 772.1 | 0.0 | 0.0 | 771.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2455_g09014.t1 | gi|602650253|ref|XP_007431523.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1-like [Python bivittatus] | 0.0 |
| habu1_s2455_g09014.t1 | gi|327265841|ref|XP_003217716.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1 [Anolis carolinensis] | 0.0 |
| habu1_s2455_g09014.t1 | gi|697520959|ref|XP_009686430.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1 [Struthio camelus australis] | 0.0 |
| habu1_s2455_g09014.t1 | gi|719758787|ref|XP_010215616.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1 [Tinamus guttatus] | 0.0 |
| habu1_s2455_g09014.t1 | gi|704192128|ref|XP_010139325.1| | PREDICTED: sodium- and chloride-dependent GABA transporter 1 [Buceros rhinoceros silvestris] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.1 |
| Brain-1 | 56.5 |
| Eye | 24.4 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.1 |
| Brain-2 | 51.3 |
| Spleen | 0.2 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.0 |
| Small intestine | 0.0 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s2455_g09014.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09014.t1 gtggtctcgagcagtgaccaaggggtcgctattcaaagaaccggaacgagtcaccataacgatggatgccagcttatacg gctggggcgcccatctgaattctcagttggctcagggtcgatggtccaccgcggatctgcagaaaagcatcaactggttg gaactcagggccatacatctggctctgctacatttcaggcgctcgatcaggaaccgtcatgttctagtccgtacggacaa cgtggcggccaaggcgcacgtcaaccgccaggggggcacacggtccagctccctcatgacggaggcgaggcggatgttcg cctgggtggaacccaatctggcatcgctcaaggcggaacacatttcgggggccaacaaccgacaggcggactatttgagt cgcgccacggtagacccttcggaatggggactgcacccggacctgttctcgtccatcatcctcagaacgcaggaggtgat tcttccgaattttagcccgaatccgtcacatgacttggaacggcagtggcacacactggacgtccgcagggcattacggc gttatatcaagcgcacggagcagttccgcaaatccgaagccctctgggtatccttccggtctagcaccctgggccagaag gtctctgccagcaccattggcagggcctctccatctaaacctagagacatggccaccaatggaacaaaagtagctgatgg gcaaatctccacagaactcagtgatgcttcaattactaatgataagcccaagactttagtagtgaaggtgcagaagaaaa aaggagatattccagacagggatgtctggaatggaaaatttgattttcttatgtcttgtgttggctatgcaattggtttg gggaatgtgtggcggttcccatacctgtgtgggaaaaatggaggaggggcattcctgattccttatttccttactttaat ttttgcgggagttcccctgtttcttttggaatgctcacttggccagttcacatccattggaggtcttggagtctggaagc tcgcaccaatgttcaaaggtgtgggattagctgctgctgttctgtccttctggcttaacatttactacattgtgattatt tcctgggccatatattacttatataactcttttactacaactcttccatggagtcactgtgataatccctggaacacaaa ccagtgtttctccaactacagcatagtaaataacaccaacatgacaagtgctgttgtggaattttgggagcgtaacatgc accaaatgacagatggactggagaaaccaggccagattcgatggccattagcaattactctggcaattgcctggatttta gtatatttctgtatctggaaaggagtaggctggactggaaaggtggtatatttctctgccacatatccatatgtcatgtt acttatcttgttcttccgtggagtaacattacctggagcaaaagatggtattttattctatgtaactcctaagtttgaga agcttacagactctgaggtctggttggatgctgccacacagatctttttttcctatggtttgggtcttggctcactgatt gcccttggaagttacaacacattcaaaaacaatgtttacagggattctatcatagtatgctgcataaactcttgcacaag catgtttgctggttttgttattttctccattgttggatttatggcttatgtaaccaaacggcctattgaagaagttgcaa aatcaggtccaggacttgcatttttagcttatccagaagcagtaacacaacttcccatctctccattttgggcaatactg ttcttctctatgttgcttatgcttggaattgacagtcagttctgtactgttgaaggattcataacagcactagtggatga atttccaaaactgttacgcagtcgaagagaaattttcattgctcttgtgtgtgttgtgtcatatctaataggattgtcta atattactcagggtggactctacgtgttcaaactttttgactattactcagcaagtggaatgagtcttttattccttgtg ttctttgagtgtatctccatatcctggtgttacggtgtaaaccgcttttatgacaatatccaagagatggttggatacag gccctgcatctggtggaagctttgttggtctttctttactccaatcattgtggcaggtgtgtttatcttcagtgcagtgc aaatgactcctctcactttggggaattatgttttcccgaaatggggccaaggtgttggctggtttatggctctctcttct atggtgctgattccaggctatatggcatacatgttccttactttaaaaggttccttaaaacagcgtatccaagtaatgat tcaaccaagtgaagacattactcatcctgaaaatggaccagaacaagcccaacagagtaattctgcaaacaaagaagcat atatataaaatcagtctttgaagtgattcttctgggggcaaatacacaaacacaaacacacacacacacacacacaacaa atacacaaaacccatggttgaatattaccacaaatttatgtctgagaataaaataacctacctctagtggcacaaaagac catcaccactatataggaagcaatgtggtatgatcaaactattttgtgggcttagttgttaacaatgttttgtgtttctg gtaatccatagactgttaacatttttattctctctcagtaagtgtggagtatctggaatttattaaaagcacacatatgt agatcatttttaatctttacattttagtgcaacaatttgaacttttgtgctagtttttattaataaatttcttactattt gattcccaa |
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Protein
| Protein ID | habu1_s2455_g09014.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09014.t1 MDASLYGWGAHLNSQLAQGRWSTADLQKSINWLELRAIHLALLHFRRSIRNRHVLVRTDNVAAKAHVNRQGGTRSSSLMT EARRMFAWVEPNLASLKAEHISGANNRQADYLSRATVDPSEWGLHPDLFSSIILRTQEVILPNFSPNPSHDLERQWHTLD VRRALRRYIKRTEQFRKSEALWVSFRSSTLGQKVSASTIGRASPSKPRDMATNGTKVADGQISTELSDASITNDKPKTLV VKVQKKKGDIPDRDVWNGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQFTSIG GLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWSHCDNPWNTNQCFSNYSIVNNTNMTSAVVE FWERNMHQMTDGLEKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYVMLLILFFRGVTLPGAKDGILFY VTPKFEKLTDSEVWLDAATQIFFSYGLGLGSLIALGSYNTFKNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAYVTKR PIEEVAKSGPGLAFLAYPEAVTQLPISPFWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPKLLRSRREIFIALVCVVS YLIGLSNITQGGLYVFKLFDYYSASGMSLLFLVFFECISISWCYGVNRFYDNIQEMVGYRPCIWWKLCWSFFTPIIVAGV FIFSAVQMTPLTLGNYVFPKWGQGVGWFMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMIQPSEDITHPENGPEQAQQSN SANKEAYI |
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