Gene
| Gene Model ID | habu1_s2455_g09016 |
|---|---|
| Locus | habu1_scaffold2455 : 634926 ... 721601 : - |
| To GenomeBrowser | habu1_scaffold2455:634926..721601 |
| Genes list of scaffold | habu1_scaffold2455 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sodium- and chloride-dependent gaba transporter 3 | GO:0005328 GO:0006812 GO:0006836 GO:0016021 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2455_g09016.t2 | 1 | 1 | SNF | 38 | 320 | 0.0 | 478.9 | 0.0 | 0.0 | 478.7 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.3 |
| Pit, infrared sensing | 0.1 |
| Nose | 0.3 |
| Brain-1 | 34.4 |
| Eye | 10.9 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.4 |
| Brain-2 | 85.0 |
| Spleen | 0.2 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 1.6 |
| Pancreas | 0.0 |
| Small intestine | 0.1 |
| Large intestine | 0.0 |
| Stomach | 14.0 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s2455_g09016.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09016.t1 gtcctcctctcaaaaatagacgcggctgcctcgcaccgcccgtgctcccaacgtgcgcgctcagcctcacgggcgcgtgt aggtaggcagattccccctcgaggcttgagagggagtcatgacagctgaaaaggctatccctacaattaatggcaaaccc gaagatgctcaggatcctgaagcctccagcaccaatttggtccacagcaacgataagaaggtgcacgaaagaggccattg gaacaataaaattgaatttgtgctatcggtggcaggggaaattattgggttggggaacgtgtggcgattcccatatctct gctacaaaaatggaggaggtgccttccttataccctatgtcattttcttcatttgctgtggaataccagtgtttttcttg gaaactgctttggggcagtttactagtgaaggaggaattacatgctggagaaaagtttgcccattgtttgaagggattgg atacgccacccaggttattgaagcacatttgaatgtttactatatcatcattttagcatgggctattttttatctattta actgcttcacaatggagcttccctgggcaagctgtggtcatgagtggaacacagaacattgtgtggaatttcagaaactt aatatgagcaattgcactcaacaatatttgaaaaatgctacttctccagtcatggaattttgggaacgaagagtgttggc catatcggatggcattgaacacattggggatctgcgctgggaactggcactatgccttctggctgcctggactatctgct acttttgcatttggaaaggtacaaagtcaactggcaaggttgtatatgtaaccgctacatttccatacgtcatgttgttg gttctactgattcgaggagtaacattacctggggcctctgaaggaataaaattctacctgtatcccgacctatctcgtct ttctgacccacaggtctgggtagatgctggaacacagatatttttctcctatgctatctgcctgggatgcttgacagccc taggaagctacaataactacaataataactgttataggtaatacacaattgtgtcattatattttttttctgttttagtt taatctatttataaatctaggtatatatttaaggtaattatttggtgatgagtatgcaagactaattaaaacacaaaaac acatacatgcatacatactgcatacactaataaacactatgcattatttaaatggt |
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| Transcript ID | habu1_s2455_g09016.t2 |
| Definition | - |
>habu1_s2455_g09016.t2 acctcttcttccttctgccaagagcggggccggagtcctgggcttgagagggagtcatgacagctgaaaaggctatccct acaattaatggcaaacccgaagatgctcaggatcctgaagcctccagcaccaatttggtccacagcaacgataagaaggt gcacgaaagaggccattggaacaataaaattgaatttgtgctatcggtggcaggggaaattattgggttggggaacgtgt ggcgattcccatatctctgctacaaaaatggaggaggtgccttccttataccctatgtcattttcttcatttgctgtgga ataccagtgtttttcttggaaactgctttggggcagtttactagtgaaggaggaattacatgctggagaaaagtttgccc attgtttgaagggattggatacgccacccaggttattgaagcacatttgaatgtttactatatcatcattttagcatggg ctattttttatctatttaactgcttcacaatggagcttccctgggcaagctgtggtcatgagtggaacacagaacattgt gtggaatttcagaaacttaatatgagcaattgcactcaacaatatttgaaaaatgctacttctccagtcatggaattttg ggaacgaagagtgttggccatatcggatggcattgaacacattggggatctgcgctgggaactggcactatgccttctgg ctgcctggactatctgctacttttgcatttggaaaggtacaaagtcaactggcaaggttgtatatgtaaccgctacattt ccatacgtcatgttgttggttctactgattcgaggagtaacattacctggggcctctgaaggaataaaattctacctgta tcccgacctatctcgtctttctgacccacaggtctgggtagatgctggaacacagatatttttctcctatgctatctgcc tgggatgcttgacagccctaggaagctacaataactacaataataactgttataggtaatacacaattgtgtcattatat tttttttctgttttagtttaatctatttataaatctaggtatatatttaaggtaattatttggtgatgagtatgcaagac taattaaaacacaaaaacacatacatgcatacatactgcatacactaataaacactatgcattatttaaatggt |
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Protein
| Protein ID | habu1_s2455_g09016.t1 |
|---|---|
| Definition | - |
>habu1_s2455_g09016.t1 MTAEKAIPTINGKPEDAQDPEASSTNLVHSNDKKVHERGHWNNKIEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPY VIFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTMELPWASCG HEWNTEHCVEFQKLNMSNCTQQYLKNATSPVMEFWERRVLAISDGIEHIGDLRWELALCLLAAWTICYFCIWKGTKSTGK VVYVTATFPYVMLLVLLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYR |
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| Protein ID | habu1_s2455_g09016.t2 |
| Definition | - |
>habu1_s2455_g09016.t2 MTAEKAIPTINGKPEDAQDPEASSTNLVHSNDKKVHERGHWNNKIEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPY VIFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTMELPWASCG HEWNTEHCVEFQKLNMSNCTQQYLKNATSPVMEFWERRVLAISDGIEHIGDLRWELALCLLAAWTICYFCIWKGTKSTGK VVYVTATFPYVMLLVLLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYR |
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