Gene
| Gene Model ID | habu1_s24_g00206 |
|---|---|
| Locus | habu1_scaffold24 : 173789 ... 188985 : - |
| To GenomeBrowser | habu1_scaffold24:173789..188985 |
| Genes list of scaffold | habu1_scaffold24 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tumor necrosis factor receptor superfamily member 11b | GO:0005578 GO:0005615 GO:0007165 GO:0030198 GO:0042489 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s24_g00206.t1 | 2 | 1 | TNFR_c6 | 35 | 62 | 1.7e-14 | 53.5 | 8.0e-09 | 3.0e-05 | 23.9 |
| habu1_s24_g00206.t1 | 2 | 2 | TNFR_c6 | 65 | 105 | 1.7e-14 | 53.5 | 1.6e-09 | 6.1e-06 | 26.2 |
| habu1_s24_g00206.t1 | 2 | 1 | Death | 235 | 277 | 1.3e-09 | 37.6 | 2.1e-06 | 0.0077 | 15.9 |
| habu1_s24_g00206.t1 | 2 | 2 | Death | 325 | 364 | 1.3e-09 | 37.6 | 1.4e-07 | 0.00053 | 19.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s24_g00206.t1 | gi|602633032|ref|XP_007423402.1| | PREDICTED: tumor necrosis factor receptor superfamily member 11B [Python bivittatus] | 0.0 |
| habu1_s24_g00206.t1 | gi|327280272|ref|XP_003224876.1| | PREDICTED: tumor necrosis factor receptor superfamily member 11B [Anolis carolinensis] | 0.0 |
| habu1_s24_g00206.t1 | gi|695141650|ref|XP_009513355.1| | PREDICTED: tumor necrosis factor receptor superfamily member 11B [Phalacrocorax carbo] | 0.0 |
| habu1_s24_g00206.t1 | gi|697434898|ref|XP_009681233.1| | PREDICTED: tumor necrosis factor receptor superfamily member 11B [Struthio camelus australis] | 0.0 |
| habu1_s24_g00206.t1 | gi|701297489|ref|XP_010009032.1| | PREDICTED: tumor necrosis factor receptor superfamily member 11B [Nestor notabilis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 19.3 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 30.3 |
| Nose | 1.4 |
| Brain-1 | 7.5 |
| Eye | 1.0 |
| fetal fibroblast | 11.3 |
| venom gland-2 | 0.3 |
| Brain-2 | 13.9 |
| Spleen | 0.6 |
| Lung | 0.4 |
| Liver | 0.0 |
| Kidney | 0.7 |
| Pancreas | 0.4 |
| Small intestine | 0.0 |
| Large intestine | 0.3 |
| Stomach | 0.2 |
| heart | 0.1 |
| ovary | 1.0 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s24_g00206.t1 |
|---|---|
| Definition | - |
>habu1_s24_g00206.t1 attgcctttccagcttcttaaagagttgtaacgcccgccgggtgcgatgaccaaatttctctgctgcacgctgctgttat tggacatctcagtcaagtggacagtccaagaaactcttccttcaaagtatctccattatgatcctatcacctcccatcgg ctgatgtgtgaccaatgtcctccaggaacttacgtcaaacagcattgtacagcctcagcaaagacggaatgtgccccttg tccagatcagtcttatgcagatgaatggaacaataatgagaaatgtcactactgcaatgtggtatgcaaggaactgcagt atgaaaaaatcaaatgcaccagcaccggaaaccgtgtctgtgagtgtgtagaaggacggtacctcaaacttgaattctgt ttgaagcacgcagcatgtcctcctggatttggcgttgttcaaaaaggtacccctgaaagtgacaccatttgtgagagatg tccagaaggacatttctctaatgatacatcatccaaagctgcctgtcaaatgcacactaactgcagtgccctaagtctta aattggtgcagaagggagactccacacatgacaacgtgtgccagggagaagagagtgataaattggaccagcaatgtgga atcgatgtcaccttgtgtgaagaagcgttcttcaggttcattgtgcccaaaaagctatcgctatcatccccttggctgaa caccctcatggacagtctgcctggcatgaagatcagtcttgaaaacagagaaagaattaagcaaaagagtagcttgcaag atcagacctttctgctactaaagttatggaaagagcaaaataaggaccacaatacagtcaagaatattgtccaaggcatt gatctttgtgaaaatagtgttttaaagcacattggccatctcaacatcacccttgagcagctcaatatcctgatggacaa cttgccagggaaacctgtgggtagagaagaaactgaacagatttttagcatgtgcaaatccacagagccagtactgaagc tcttgaatttgtggaggataaacaataaagaccgagacaccatcaagagcctgacattaggactgaagcacctgaaatca taccatttccccaagacaacaattcaaggttttcggaaggtggtgaaattccttcacagcctcacaatgtataaattata ccagaagcttttcttagaaatgctaggaaaccaggtccatttggtaaaaatgagacgcgggtagttttaagttctctgat ctttcgttttgccacttgctgctagcaataattaaatgggggaggggaaagttttcct |
|
Protein
| Protein ID | habu1_s24_g00206.t1 |
|---|---|
| Definition | - |
>habu1_s24_g00206.t1 MTKFLCCTLLLLDISVKWTVQETLPSKYLHYDPITSHRLMCDQCPPGTYVKQHCTASAKTECAPCPDQSYADEWNNNEKC HYCNVVCKELQYEKIKCTSTGNRVCECVEGRYLKLEFCLKHAACPPGFGVVQKGTPESDTICERCPEGHFSNDTSSKAAC QMHTNCSALSLKLVQKGDSTHDNVCQGEESDKLDQQCGIDVTLCEEAFFRFIVPKKLSLSSPWLNTLMDSLPGMKISLEN RERIKQKSSLQDQTFLLLKLWKEQNKDHNTVKNIVQGIDLCENSVLKHIGHLNITLEQLNILMDNLPGKPVGREETEQIF SMCKSTEPVLKLLNLWRINNKDRDTIKSLTLGLKHLKSYHFPKTTIQGFRKVVKFLHSLTMYKLYQKLFLEMLGNQVHLV KMRRG |
|