Gene
| Gene Model ID | habu1_s24_g00208 |
|---|---|
| Locus | habu1_scaffold24 : 236156 ... 286149 : + |
| To GenomeBrowser | habu1_scaffold24:236156..286149 |
| Genes list of scaffold | habu1_scaffold24 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collectin- partial | GO:0005581 GO:0030246 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s24_g00208.t1 | 2 | 1 | Collagen | 28 | 79 | 1.0e-11 | 44.2 | 4.0e-11 | 2.0e-07 | 30.4 |
| habu1_s24_g00208.t1 | 2 | 2 | Collagen | 43 | 97 | 1.0e-11 | 44.2 | 3.4e-10 | 1.7e-06 | 27.4 |
| habu1_s24_g00208.t1 | 1 | 1 | Lectin_C | 147 | 253 | 2.2e-15 | 57.1 | 7.0e-19 | 3.5e-15 | 56.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s24_g00208.t1 | gi|602633034|ref|XP_007423403.1| | PREDICTED: collectin-10 [Python bivittatus] | 0.0 |
| habu1_s24_g00208.t1 | gi|327280274|ref|XP_003224877.1| | PREDICTED: collectin-10 [Anolis carolinensis] | 0.0 |
| habu1_s24_g00208.t1 | gi|478513842|ref|XP_004431174.1| | PREDICTED: collectin-10 [Ceratotherium simum simum] | 0.0 |
| habu1_s24_g00208.t1 | gi|73974551|ref|XP_851244.1| | PREDICTED: collectin-10 isoform X2 [Canis lupus familiaris] | 0.0 |
| habu1_s24_g00208.t1 | gi|530632758|ref|XP_005303438.1| | PREDICTED: collectin-10 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.4 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 0.5 |
| Nose | 0.1 |
| Brain-1 | 0.3 |
| Eye | 0.1 |
| fetal fibroblast | 0.8 |
| venom gland-2 | 0.4 |
| Brain-2 | 0.3 |
| Spleen | 0.2 |
| Lung | 1.3 |
| Liver | 0.3 |
| Kidney | 0.1 |
| Pancreas | 0.0 |
| Small intestine | 0.2 |
| Large intestine | 1.5 |
| Stomach | 0.2 |
| heart | 0.6 |
| ovary | 0.1 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s24_g00208.t1 |
|---|---|
| Definition | - |
>habu1_s24_g00208.t1 acgaccggttggggtcgcggcattaaaaaggttgagaaccactgccttaaagaatcttttattcgaggaacaaatgatgt ccatggagattctcaatcatccagaagatggcgaccgacagacagccgagatctgttccacgcataccattttacctgga ccgaaaggagatgaaggtgaaaagggagatcaaggagaaatgggaaaaactgggaaacttggacccacaggatccaaagg agacaaaggaacaattggagatattggtgaacaaggaatgataggtaaaattggaccaattggcagaaaaggtgacaaag gagtaaagggcgagtctggagtcactggagggaagggtaaagcaggtggcgtctgtgattgtgggaaatatcgcaaagtt gttggacaactggacatcaatgtggctcgactcaaaaattccattagtttcgtaaagaatgtgttagcaggcatcagaga aacagaagaaaaatactactacattgttcaagaagaaaagaactacagggaagccctcgctcactgcaggattcgagaag gaattttagcgatgccaaaggatgaagctgctaacgcggtgatttctgactacgtcttccagagtggcttcttccgagtc tttataggcctgaacgacatagagaaggaaggccagttcatgtatgcagaccgtacaccattgcaaagctacagcaattg gaaggaaggagcgcctcaggacacccgagagaatgaggactgtgtggagatgctcagcactgggaaatggaatgacacag aatgccacctcaccatgtattttgtctgcgaattcccaaagagaaggacatgctcccatgtaacacctctcctgcgcgag ctgcactggctgccggtggccttccgggtgcgcttcaaggtgttagtaacaacttttaaagcgctccatggcaatggacc taggtatttgcaagaccgcctcctaccaaacacctcccttcgaccagtccgctcccacagagagggcctccttagagtgc cgtcggccagacaatgccggctggcgacccccagggggagagccttctctgtggcagctcctgccctctggaatgaccta ccccccgacctacgtacagttgcggacctgcgcctttttcgcccagccctgaaggcccatctattccgtgcggccagcct ggcgtagtttgattatgtttcagtgggggggggtttacgggtgtgtttttagaacaggcctgttatttaattcgatttta aaacaaactatttatttattatcgtggtttttagtatcgcctgttcaccgccctgagtcccgcaagggagatagggcggt atataaatttaataaataaataaataaataaataaataaataaataaataaataagaaagtgtttttctaaagt |
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Protein
| Protein ID | habu1_s24_g00208.t1 |
|---|---|
| Definition | - |
>habu1_s24_g00208.t1 MSMEILNHPEDGDRQTAEICSTHTILPGPKGDEGEKGDQGEMGKTGKLGPTGSKGDKGTIGDIGEQGMIGKIGPIGRKGD KGVKGESGVTGGKGKAGGVCDCGKYRKVVGQLDINVARLKNSISFVKNVLAGIRETEEKYYYIVQEEKNYREALAHCRIR EGILAMPKDEAANAVISDYVFQSGFFRVFIGLNDIEKEGQFMYADRTPLQSYSNWKEGAPQDTRENEDCVEMLSTGKWND TECHLTMYFVCEFPKRRTCSHVTPLLRELHWLPVAFRVRFKVLVTTFKALHGNGPRYLQDRLLPNTSLRPVRSHREGLLR VPSARQCRLATPRGRAFSVAAPALWNDLPPDLRTVADLRLFRPALKAHLFRAASLA |
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