Gene
| Gene Model ID | habu1_s2598_g09392 |
|---|---|
| Locus | habu1_scaffold2598 : 1113494 ... 1117536 : - |
| To GenomeBrowser | habu1_scaffold2598:1113494..1117536 |
| Genes list of scaffold | habu1_scaffold2598 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor sox-9 | GO:0006355 GO:0006366 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2598_g09392.t1 | 1 | 1 | Sox_N | 22 | 95 | 1.5e-27 | 96.4 | 2.1e-31 | 1.5e-27 | 96.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2598_g09392.t1 | gi|591362422|ref|XP_007056120.1| | PREDICTED: transcription factor SOX-9 [Chelonia mydas] | 0.0 |
| habu1_s2598_g09392.t1 | gi|557294160|ref|XP_006029531.1| | PREDICTED: transcription factor SOX-9 [Alligator sinensis] | 0.0 |
| habu1_s2598_g09392.t1 | gi|564730651|ref|NP_001274197.1| | uncharacterized protein LOC102573123 [Alligator mississippiensis] | 0.0 |
| habu1_s2598_g09392.t1 | gi|530578183|ref|XP_005283023.1| | PREDICTED: transcription factor SOX-9 [Chrysemys picta bellii] | 0.0 |
| habu1_s2598_g09392.t1 | gi|729759970|ref|XP_010576880.1| | PREDICTED: transcription factor SOX-9 isoform X1 [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.9 |
| Venom grand-1 | 15.0 |
| Pit, infrared sensing | 5.8 |
| Nose | 10.7 |
| Brain-1 | 5.9 |
| Eye | 20.2 |
| fetal fibroblast | 13.6 |
| venom gland-2 | 17.8 |
| Brain-2 | 7.6 |
| Spleen | 6.4 |
| Lung | 9.1 |
| Liver | 2.0 |
| Kidney | 1.2 |
| Pancreas | 25.7 |
| Small intestine | 4.2 |
| Large intestine | 6.4 |
| Stomach | 7.4 |
| heart | 1.1 |
| ovary | 0.4 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s2598_g09392.t1 |
|---|---|
| Definition | - |
>habu1_s2598_g09392.t1 nnnnnnnnnnnnnnnnnattattattattattccaccccccgcccgttgatattttggcttccgccctttttctcgcatg aatctcctcgaccccttcatgaagatgaccgaagagcaggaaaagtgtctgtctggcgctcccagcccgaccatgtcgga ggattccgcgggctctccctgcccttcgggctccggctcggacaccgagaacacgagaccccaagagaacaccttcccca agagcgaccaggacctgaagaaagagagcgacgaggacaagttcccggtgtgcatccgagaagccgtcagccaggtcctc aagggctacgactggaccctggtgcccatgcccgtccgggtgaacggatccaaaagcttggggttattgaatgagagcga gaaacgcccatttgtggaggaggctgaacgcttgagagtgcaacataaaaaagaccatccagactacaagtaccagccac gaaggagaaagtcagtgaagaacggacaggctgagcaagaagaaggatcggagcagacccacatctctccaaatgctatc ttcaaggccctgcaggcagattcgccccagtcttcatccagcatgagtgaagtacattcacctggagagcattctgggca atctcaagggccacctactcctcctaccactcctaaaacagatgtccagcctggtaagcaggacctgaagcgggaaggtc gcccactgcaagaaggaggaagacagccaccccatattgacttccgagacgtggacattggggaactcagcagtgatgtc atctctaacattgagacttttgatgttaatgagtttgaccagtatctcccacccaatggccacccaggagttccagtcac ccatggccagcctggccaagtcacctacacaggcagctacgggatcagtagcaccacagctactccagcaggcactgggc atgtctggatgtccaagcagcagcagcagccaccaccgccttctcagcagccaccctcccaagctcagccacaaccacca cccccaccgcctcagcagcacacactcaccaccctgagtagtgaaccaggtcagcctcaacagaggacacatattaagac cgagcagctcagtcccagccattacactgaccaacagcagcattcacctcagcagatcagctacagttccttcaatctcc agcactatggctcttcctacccgaccatcactcgctcccagtatgactacacagaccatcagagctccaatacttactac agccatgctgccagccagagttccagcctctattctacattcacttacatgaaccccacccagaggcccatgtacacccc aattgcagacactacgggggtaccttccattcctcagacccatagcccacaacactgggaacagccagtctatacacagc tcaccagaccataaagctctgaaggatggtgtcaattccccagacttataaaaacattttttaagctaaaagtg |
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Protein
| Protein ID | habu1_s2598_g09392.t1 |
|---|---|
| Definition | - |
>habu1_s2598_g09392.t1 MNLLDPFMKMTEEQEKCLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKSDQDLKKESDEDKFPVCIREAVSQV LKGYDWTLVPMPVRVNGSKSLGLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEQEEGSEQTHISPNA IFKALQADSPQSSSSMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKQDLKREGRPLQEGGRQPPHIDFRDVDIGELSSD VISNIETFDVNEFDQYLPPNGHPGVPVTHGQPGQVTYTGSYGISSTTATPAGTGHVWMSKQQQQPPPPSQQPPSQAQPQP PPPPPQQHTLTTLSSEPGQPQQRTHIKTEQLSPSHYTDQQQHSPQQISYSSFNLQHYGSSYPTITRSQYDYTDHQSSNTY YSHAASQSSSLYSTFTYMNPTQRPMYTPIADTTGVPSIPQTHSPQHWEQPVYTQLTRP |
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