Gene
| Gene Model ID | habu1_s259_g01314 |
|---|---|
| Locus | habu1_scaffold259 : 268224 ... 377546 : - |
| To GenomeBrowser | habu1_scaffold259:268224..377546 |
| Genes list of scaffold | habu1_scaffold259 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| myelin basic partial | GO:0007399 GO:0019911 GO:0042995 GO:0097458 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s259_g01314.t1 | 1 | 1 | RVT_1 | 1 | 129 | 2.6e-23 | 82.5 | 5.4e-27 | 4.0e-23 | 81.9 |
| habu1_s259_g01314.t1 | 2 | 1 | Myelin_MBP | 294 | 354 | 4.6e-40 | 136.7 | 3.4e-22 | 2.5e-18 | 66.5 |
| habu1_s259_g01314.t1 | 2 | 2 | Myelin_MBP | 376 | 485 | 4.6e-40 | 136.7 | 1.0e-22 | 7.5e-19 | 68.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s259_g01314.t1 | gi|542147922|ref|XP_005482952.1| | PREDICTED: myelin basic protein isoform X1 [Zonotrichia albicollis] | 0.0 |
| habu1_s259_g01314.t1 | gi|542147924|ref|XP_005482953.1| | PREDICTED: myelin basic protein isoform X2 [Zonotrichia albicollis] | 0.0 |
| habu1_s259_g01314.t1 | gi|524987840|ref|XP_005041847.1| | PREDICTED: myelin basic protein isoform X1 [Ficedula albicollis] | 0.0 |
| habu1_s259_g01314.t1 | gi|637290166|ref|XP_008106961.1| | PREDICTED: myelin basic protein isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s259_g01314.t1 | gi|637290174|ref|XP_008106963.1| | PREDICTED: myelin basic protein isoform X3 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.4 |
| Venom grand-1 | 2.5 |
| Pit, infrared sensing | 42.4 |
| Nose | 2.6 |
| Brain-1 | 76.1 |
| Eye | 13.3 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 1.4 |
| Brain-2 | 357.2 |
| Spleen | 3.3 |
| Lung | 0.4 |
| Liver | 0.2 |
| Kidney | 0.5 |
| Pancreas | 0.8 |
| Small intestine | 0.4 |
| Large intestine | 0.5 |
| Stomach | 0.3 |
| heart | 0.2 |
| ovary | 0.2 |
| cheek muscle | 7.6 |
Transcript
| Transcript ID | habu1_s259_g01314.t1 |
|---|---|
| Definition | - |
>habu1_s259_g01314.t1 taaggcatttgataaagtagatcacaacctactacttgataaaatagaaaaatgtgggttagacagtatcaccaccagat ggattcatagctggttgacgggccgtactcagtgtgtggtcctcaatggaactgcatctacatggaaggaagtgtgtagt agggtgccccagggctctgttctggccccaatgctgttcaacatcttcatcaacgatctggacgaggggatagatgggga actcatcaaatttgcagacgacaccaagctggcaggaatagccaacactccagaagataggtttaagacacaggaggatc tggacagatttgaacactgggcactatctaataaaatgaaattcaatgatgaaaaaaatcacgttttgaagcgcatagag gatcgtggaatttttggtgccctctgggcttggttgtttgcttgcagacatttcatcacccaactaataaacatcatcag taatactaatgaaaatgctcaggaagctgaacataaggatagctccaaagcaatcccgttaacccaggagccttcagaag acaatgaagtttttggagaggcagatgtgaaccagaacaatgggacctccactaagggcagagcggtgacagactccaag gacacagcggatccaaagaatgcctggaaggaagccaacccagctgacacaactggtcgcccccatttggtccgcctctt ttcccgagatgccccaggcagagaagacaacaccttcaaagatcggccctctgaatcagatgagctgcagaccattcagg aagacagtgcagtagcagcttctgagaattcggatttgatggcttcacaaaaacgctcctctttccggcatggttccaaa cttgcaactgcaagtaccatagaccatgctagacatggatcaccacgaagatacagggaaccaagtctacttgattcatt gggcagattctttggcggtgacaagcattatccaaggcggggcaaggaagaaaaaataataatgcaaagcaaacaaaata tccccaacatgcctcagaagaaagtcatcctcttacctatatcatttatatattcatacaacctgactctggactatcac catgcctccagagttagccatgtaagttccctgcctcatccaaggtctcagcatggacgctatgtggatgaaaacccagt agtccacttcttcaggaacattgtgtcacccagaacaactcctcctcttcaggcaaaagggagaggattatccttcagca gatttagctggggtggcgaaactcacaaacctggatatggaagtggcaaattctatgagcataaatatgctcacaaggga cacaaaggataccgctatgatggccagggcacactgtctaaattgtttaaactgggaagctccggttcccgacctggttc caggtctggctcccctgttcctaggcgctgaaacacttaagatgtcactaaaaggctacattctctgcttcataacatag ctatcccgaggattaataacaaattgctgaattccttagataaaaaaacaacaacacaatctatttgttaatgtcagttg agttatgcacgcagtaggaatatgcaaaactatattggcaaatgctgaccaatagttgaaaagtcaacaagaaaagcctc ccatacttgcaaggtagcttgtggtcagcattatttaggaaaaaataacaaaatccccccccatcttattccttcttctt caaggtgctccccaagaaatataaagctttaatttttcaggaacacgcaacattaattccctttcagatttctttttcac taatctttaatcacataaaatataaccccatctaaatttatgcggtcattaacgaatctttttgagatctttgctgtaaa caaacaataataaaaaaacatgtgcagaatgttgta |
|
Protein
| Protein ID | habu1_s259_g01314.t1 |
|---|---|
| Definition | - |
>habu1_s259_g01314.t1 KAFDKVDHNLLLDKIEKCGLDSITTRWIHSWLTGRTQCVVLNGTASTWKEVCSRVPQGSVLAPMLFNIFINDLDEGIDGE LIKFADDTKLAGIANTPEDRFKTQEDLDRFEHWALSNKMKFNDEKNHVLKRIEDRGIFGALWAWLFACRHFITQLINIIS NTNENAQEAEHKDSSKAIPLTQEPSEDNEVFGEADVNQNNGTSTKGRAVTDSKDTADPKNAWKEANPADTTGRPHLVRLF SRDAPGREDNTFKDRPSESDELQTIQEDSAVAASENSDLMASQKRSSFRHGSKLATASTIDHARHGSPRRYREPSLLDSL GRFFGGDKHYPRRGKEEKIIMQSKQNIPNMPQKKVILLPISFIYSYNLTLDYHHASRVSHVSSLPHPRSQHGRYVDENPV VHFFRNIVSPRTTPPLQAKGRGLSFSRFSWGGETHKPGYGSGKFYEHKYAHKGHKGYRYDGQGTLSKLFKLGSSGSRPGS RSGSPVPRR |
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