Gene
| Gene Model ID | habu1_s264_g01339 |
|---|---|
| Locus | habu1_scaffold264 : 146076 ... 159493 : + |
| To GenomeBrowser | habu1_scaffold264:146076..159493 |
| Genes list of scaffold | habu1_scaffold264 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s264_g01339.t1 | 1 | 1 | PseudoU_synth_2 | 78 | 230 | 3.1e-13 | 49.8 | 4.4e-17 | 6.5e-13 | 48.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s264_g01339.t1 | gi|602637196|ref|XP_007425447.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 3 [Python bivittatus] | 0.0 |
| habu1_s264_g01339.t1 | gi|637273551|ref|XP_008103771.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 3 [Anolis carolinensis] | 0.0 |
| habu1_s264_g01339.t1 | gi|640818843|ref|XP_008066303.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 3 [Tarsius syrichta] | 0.0 |
| habu1_s264_g01339.t1 | gi|564232010|ref|XP_006260389.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 3 [Alligator mississippiensis] | 0.0 |
| habu1_s264_g01339.t1 | gi|478539684|ref|XP_004443935.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 3-like, partial [Ceratotherium simum simum] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.1 |
| Venom grand-1 | 3.0 |
| Pit, infrared sensing | 2.5 |
| Nose | 2.6 |
| Brain-1 | 1.6 |
| Eye | 1.4 |
| fetal fibroblast | 5.5 |
| venom gland-2 | 3.8 |
| Brain-2 | 1.3 |
| Spleen | 2.6 |
| Lung | 1.7 |
| Liver | 3.7 |
| Kidney | 9.1 |
| Pancreas | 7.5 |
| Small intestine | 5.1 |
| Large intestine | 2.6 |
| Stomach | 2.8 |
| heart | 3.7 |
| ovary | 32.9 |
| cheek muscle | 11.5 |
Transcript
| Transcript ID | habu1_s264_g01339.t1 |
|---|---|
| Definition | - |
>habu1_s264_g01339.t1 cgcgcgctcgggatgttcagcattagcctccgccgcgtggtctgcgcgcgcggaaggctgcgcgcgcatttcagcacccc gcctgcttggtaagaaaatgggtcagtttccattagcacaggggtcttcaaacttggcccttttacgacctgtggacttc aactcccagaattcctcagccaggtatcacttgctgaagctaaaaaaattagacaagtcaatgagagaaacacgcagtaa aataaactacttgaaaccgttaaagccactggagcctgattcattgctgaaactactggaagcatctatagtacatgcgg atggtacacttgtggccattaacaaaccttgcggtatccctgtatcaggcaagccagaagacctgactttgcaatctgtt ctgccacagctaagccagaatctaaatctcccacaagatctccaggtgatcaaagctccagaaaaggaaggttctggact tgttctgctgtcaagttgcccaaacactacccgatatatccaagatttttatattcagcgtaagaagaaaaaagatccag ttgctacttactgtgctgttactaccaggactccggtagctacagaaggagaaattcatacaggcctcaagctggtggac attgatggctttgatctggtagtgccagaggcttccccttctcgcaagagcctgcaaatgaaggaggtaaaaaagacact gacttactacaaagtgctggactcaaaggagggctgtgcccttttgcagctgcagccagtgacaagaattaagcctgtgc cttccaaccatgccttttttgaattgcaccactaataaaggctctagaggaacatgtgatgcaaaagctccgtttgcggc aacaagtgatgtttcgcttgcagcttcacctccaccttcaccagcttctcctgcctgacggttgctgttcttcccgcact ctcttagtggccccccctcctcctttcttcctccagacccttcgtagtctcggacttaacctgcccccctgagggaagca cacagtgaaagagtatgcaaaggacttgtctgaattcatccgttgctggcagcccagtcaagtggatgcggctgcctcaa aatccagcagcagagctcccacacaaggaaaaattccacacggttacggaagaaaactttgcttcttcaggaaaaggctc agatatatattgcattccgtgagagctgcttgaataggcagcatacaaatgattgattgtggggaaaaaagcttatcaaa aagtgcgataggaaggaaatttctaagtaaaaacctctgttgtaactggctggtataatctggctaaaaaggtattttaa agtgaacgtttgtgagttagtttgtttttattaaaagttgttcctgtacccacagaa |
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Protein
| Protein ID | habu1_s264_g01339.t1 |
|---|---|
| Definition | - |
>habu1_s264_g01339.t1 MGQFPLAQGSSNLALLRPVDFNSQNSSARYHLLKLKKLDKSMRETRSKINYLKPLKPLEPDSLLKLLEASIVHADGTLVA INKPCGIPVSGKPEDLTLQSVLPQLSQNLNLPQDLQVIKAPEKEGSGLVLLSSCPNTTRYIQDFYIQRKKKKDPVATYCA VTTRTPVATEGEIHTGLKLVDIDGFDLVVPEASPSRKSLQMKEVKKTLTYYKVLDSKEGCALLQLQPVTRIKPVPSNHAF FELHH |
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