Gene
| Gene Model ID | habu1_s2696_g09633 |
|---|---|
| Locus | habu1_scaffold2696 : 715732 ... 719735 : - |
| To GenomeBrowser | habu1_scaffold2696:715732..719735 |
| Genes list of scaffold | habu1_scaffold2696 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| general transcription factor iih subunit 3 isoform x2 | EC:2.7.11.23 GO:0000439 GO:0005675 GO:0006289 GO:0006355 GO:0006366 GO:0006468 GO:0008094 GO:0008353 GO:0009069 GO:0047485 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2696_g09633.t1 | 1 | 1 | Tfb4 | 8 | 279 | 0.0 | 338.1 | 0.0 | 0.0 | 337.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2696_g09633.t1 | gi|602635716|ref|XP_007424720.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2696_g09633.t1 | gi|602635714|ref|XP_007424719.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2696_g09633.t1 | gi|530618116|ref|XP_005298780.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s2696_g09633.t1 | gi|557258966|ref|XP_006015174.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s2696_g09633.t1 | gi|542165911|ref|XP_005491561.1| | PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Zonotrichia albicollis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.2 |
| Venom grand-1 | 13.2 |
| Pit, infrared sensing | 10.9 |
| Nose | 8.0 |
| Brain-1 | 7.2 |
| Eye | 9.6 |
| fetal fibroblast | 29.7 |
| venom gland-2 | 19.1 |
| Brain-2 | 8.1 |
| Spleen | 8.9 |
| Lung | 7.3 |
| Liver | 13.0 |
| Kidney | 16.6 |
| Pancreas | 13.8 |
| Small intestine | 8.9 |
| Large intestine | 7.7 |
| Stomach | 8.0 |
| heart | 14.0 |
| ovary | 38.5 |
| cheek muscle | 17.5 |
Transcript
| Transcript ID | habu1_s2696_g09633.t1 |
|---|---|
| Definition | - |
>habu1_s2696_g09633.t1 gacgccaagaagggtgcgccagagggctcgtgacgtcactctcaggcgaccggactgcgccgctatgagcgcggatgagg aagtgaatctcctagtcattgtcgttgatattaaccctatttggtggggcaagcaagccttgttgggctcagagcttaca ttatcaaaatgcctcgatgcgaccatggtgttgggaaactcacacttatttatgaaccgcaacaacaaacttgctgtgat agccagtcatatacaagaaagccgtttcctgtatcctggaaaacactgggcagttgtcgatctctttggagaatcaaatg tttctggtagtaaagatggaaaatatgaattattatccaccataaatgaaaccattgcagaggagataaaggacctgatg accaatactgaagtaaaggggcaacagacagaaactttgctggctggatctcttgctaaagcactttgctatattcacag agtaacaagagagattaaaaccagccaggaaataaagtccaggattttggtcatcaaagctgctgaagacagcacattac aatatatgaacttcatgaacgttatctttgcagcccagaaacggagtattttaattgatgcctgtgtgttggactcagat tcgggacttttgcagcaggcatgtgatataactggcgggatctacttgaaaattccatacaagccttcgcttctgcagta tttgctgtgggtttatctgcctgatcaagatcagagatcccagttgatcctcccaccgcctgttcacgtggattaccgtg ctgcctgcttctgccacaggaatcttattgaaattggctatgtctgctcagtgtgtttgtcgatattctgcaacttcagt ccaatttgtaccacttgtgaaaccgctttcaagatttcgctgccggctgtcatgaagtctaagaaaaagaaattgaaagt cgcgatgtagctgcattgtggatttcccttgccctctgtgtgggaagtcctgtctcccagactgtaactataaaactaaa aaaaacggagcgccagaaaccaaaatgtattttggaatgatcaacaaagggctaaaagtttcaagccagtggatacattg tccaggacgctatttctgtactaaagtgttagaaaatcaaagtctttctgccactggtttaaactaacgcctgaaatcag agaagaaggaaataaagttggtatgtaaaactcatttc |
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Protein
| Protein ID | habu1_s2696_g09633.t1 |
|---|---|
| Definition | - |
>habu1_s2696_g09633.t1 MSADEEVNLLVIVVDINPIWWGKQALLGSELTLSKCLDATMVLGNSHLFMNRNNKLAVIASHIQESRFLYPGKHWAVVDL FGESNVSGSKDGKYELLSTINETIAEEIKDLMTNTEVKGQQTETLLAGSLAKALCYIHRVTREIKTSQEIKSRILVIKAA EDSTLQYMNFMNVIFAAQKRSILIDACVLDSDSGLLQQACDITGGIYLKIPYKPSLLQYLLWVYLPDQDQRSQLILPPPV HVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKISLPAVMKSKKKKLKVAM |
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