Gene
| Gene Model ID | habu1_s2696_g09635 |
|---|---|
| Locus | habu1_scaffold2696 : 724521 ... 731975 : - |
| To GenomeBrowser | habu1_scaffold2696:724521..731975 |
| Genes list of scaffold | habu1_scaffold2696 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase ddx55 | GO:0004386 GO:0005524 GO:0008152 GO:0016020 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2696_g09635.t1 | 1 | 1 | DEAD | 33 | 212 | 3.69943e-43 | 146.9 | 1.4013e-45 | 2.90069e-42 | 144.0 |
| habu1_s2696_g09635.t1 | 1 | 1 | Helicase_C | 292 | 363 | 3.2e-21 | 74.9 | 2.9e-23 | 5.4e-20 | 71.0 |
| habu1_s2696_g09635.t1 | 1 | 1 | DUF4217 | 403 | 465 | 3.9e-19 | 67.9 | 4.7e-22 | 8.7e-19 | 66.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2696_g09635.t1 | gi|602635712|ref|XP_007424718.1| | PREDICTED: ATP-dependent RNA helicase DDX55 [Python bivittatus] | 0.0 |
| habu1_s2696_g09635.t1 | gi|591366954|ref|XP_007058329.1| | PREDICTED: ATP-dependent RNA helicase DDX55 [Chelonia mydas] | 0.0 |
| habu1_s2696_g09635.t1 | gi|530618120|ref|XP_005298782.1| | PREDICTED: ATP-dependent RNA helicase DDX55 [Chrysemys picta bellii] | 0.0 |
| habu1_s2696_g09635.t1 | gi|57525164|ref|NP_001006185.1| | ATP-dependent RNA helicase DDX55 [Gallus gallus] | 0.0 |
| habu1_s2696_g09635.t1 | gi|327276052|ref|XP_003222785.1| | PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.2 |
| Venom grand-1 | 7.6 |
| Pit, infrared sensing | 5.0 |
| Nose | 4.5 |
| Brain-1 | 3.3 |
| Eye | 5.5 |
| fetal fibroblast | 8.1 |
| venom gland-2 | 9.4 |
| Brain-2 | 2.8 |
| Spleen | 4.8 |
| Lung | 5.3 |
| Liver | 6.1 |
| Kidney | 5.7 |
| Pancreas | 4.9 |
| Small intestine | 5.3 |
| Large intestine | 5.2 |
| Stomach | 5.1 |
| heart | 6.5 |
| ovary | 15.0 |
| cheek muscle | 8.1 |
Transcript
| Transcript ID | habu1_s2696_g09635.t1 |
|---|---|
| Definition | - |
>habu1_s2696_g09635.t1 tgcgggggacctccatgaggtcggacaggattttcggcaaagaaatccggggcgggagggcgcaagatggagcaagtgac cgaagggacgtgggaatcgctgcccgtggagctcagcccgggcgtcctgcaggccttgcgggagctgcgcttctctcaca tgacgcccgtgcagagtgcaaccatccctttatttatgaccaataaagatgtggcagctgaagcagtaaccggcagtgga aaaacgctcgcatttgtcattcccatcatagaaatacttctccggcgtgaagaaaagcttaaaaaaatgcagattggcgc gcttatcatcactcccaccagagagcttgctatccaaatagatgaggtgatctcccatttcattaaatattacccacagt ttagtcagtgccttttgattggtgggaaaaatcccatggaagatgtagaaagattcaaagaacaaggcggaaacatcctg gtggccaccccaggtcggttggaggacatgttcaggaggaaatccgaggggctggatttggccaaggctgtaaaatctct tgatattttggtcttggatgaagcagatcgactgctggacatggggttcgaagccagtttgaatactatcctggattttc tgcccaagcagagacggacaggtctcttctctgcaactcagacccaggaagtggagaacttagtgagagcgggactccga aaccccgtccgtatctcagtgaaggagaagggaatggcagcaagtaacacccagaagactcccactcggctccagaatta ttacatgacctgcaaggcggacgagaaatttaaccagctggttcacttccttcgtcaacacaaaccagaaaagcatcttg tctttttcagtacctgtgcttgtgtggaatattatgggaaggctttggagtctttgattaagaatgtgaaaattatgtgc atccatggaaagatgaaacacaagaggaataggatctttacagagttccggaaacttccaagcggcatcctggtttgtac cgacgtgatggcccgtggcatagacatcccagaggtgaactgggttttgcagtatgacccaccgagcagtgcaagcgcct tcgtgcatcgctgtggccgcactgcccgtatcggccacctgggcagcgcgcttgtcttcttgcttcctatggaagaagct tacatcactttcctagccattaaccaaaagtgccccatggaggaactgaaaccgcagaggaacgtcacggatgtcctacc taagctgaagtcactgagcctggctgacagagccatgtacgaaaaagggatgaaggccttcgtgtcctgcgtccaagcct atgccaaacacgagtgcaacctgatcttccgaataaaagatctggactttgccagcctagcccgaggttttgccctcttg aggatgccaaagatgccggagctgagaggcaaggacctctcggactttgcccccgtcgacattgacacggactcgatcgc gttcaaagacaagaacagggaaagacagaggcagaagctgttggagcagtggaaggaagagggtccggtccgtagagtgg ggaggaagatgccccgaaatcaagcttggtccaagcagaaagcaaagaaggagaagaaaaggaaattgatggcgaaaagg aaaagggaggagggttctgaccccgacaacgaagatatggaggagcttctgaatgacacccggcttttgaaaaagctgaa aaggggtaaaatcagcaagaaggagtttgagaagacgctgctgggcagtagggaaggaggaagtggctcagactcagaag gataaaaatatgaagtgaaaacctgagcgtttctcgtctcactaatacagactcttttgcaagtagtactg |
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Protein
| Protein ID | habu1_s2696_g09635.t1 |
|---|---|
| Definition | - |
>habu1_s2696_g09635.t1 MEQVTEGTWESLPVELSPGVLQALRELRFSHMTPVQSATIPLFMTNKDVAAEAVTGSGKTLAFVIPIIEILLRREEKLKK MQIGALIITPTRELAIQIDEVISHFIKYYPQFSQCLLIGGKNPMEDVERFKEQGGNILVATPGRLEDMFRRKSEGLDLAK AVKSLDILVLDEADRLLDMGFEASLNTILDFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGMAASNTQKTPT RLQNYYMTCKADEKFNQLVHFLRQHKPEKHLVFFSTCACVEYYGKALESLIKNVKIMCIHGKMKHKRNRIFTEFRKLPSG ILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHLGSALVFLLPMEEAYITFLAINQKCPMEELKPQRNV TDVLPKLKSLSLADRAMYEKGMKAFVSCVQAYAKHECNLIFRIKDLDFASLARGFALLRMPKMPELRGKDLSDFAPVDID TDSIAFKDKNRERQRQKLLEQWKEEGPVRRVGRKMPRNQAWSKQKAKKEKKRKLMAKRKREEGSDPDNEDMEELLNDTRL LKKLKRGKISKKEFEKTLLGSREGGSGSDSEG |
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