Gene
Gene Model ID | habu1_s2696_g09642 |
---|---|
Locus | habu1_scaffold2696 : 804106 ... 806523 : + |
To GenomeBrowser | habu1_scaffold2696:804106..806523 |
Genes list of scaffold | habu1_scaffold2696 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s2696_g09642.t1 | 1 | 1 | Sep15_SelM | 2 | 46 | 7.2e-11 | 41.6 | 1.2e-14 | 9.3e-11 | 41.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s2696_g09642.t1 | gi|602672353|ref|XP_007441682.1| | PREDICTED: LOW QUALITY PROTEIN: selenoprotein M-like [Python bivittatus] | 8.0e-36 |
habu1_s2696_g09642.t1 | gi|675631585|ref|XP_008944393.1| | PREDICTED: selenoprotein M [Merops nubicus] | 4.0e-30 |
habu1_s2696_g09642.t1 | gi|543279405|ref|XP_005427655.1| | PREDICTED: selenoprotein M-like [Geospiza fortis] | 2.0e-29 |
habu1_s2696_g09642.t1 | gi|697504537|ref|XP_009680734.1| | PREDICTED: selenoprotein M-like [Struthio camelus australis] | 2.0e-29 |
habu1_s2696_g09642.t1 | gi|701354522|ref|XP_010004857.1| | PREDICTED: selenoprotein M [Chaetura pelagica] | 2.0e-29 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 78.0 |
Venom grand-1 | 1999.3 |
Pit, infrared sensing | 134.2 |
Nose | 450.6 |
Brain-1 | 37.8 |
Eye | 357.4 |
fetal fibroblast | 111.9 |
venom gland-2 | 3783.0 |
Brain-2 | 15.4 |
Spleen | 162.9 |
Lung | 33.1 |
Liver | 3.3 |
Kidney | 5.7 |
Pancreas | 661.1 |
Small intestine | 16.2 |
Large intestine | 58.5 |
Stomach | 17.4 |
heart | 22.6 |
ovary | 1.8 |
cheek muscle | 17.1 |
Transcript
Transcript ID | habu1_s2696_g09642.t1 |
---|---|
Definition | - |
>habu1_s2696_g09642.t1 acagatggagggaagacggtgtcctcttccagcagcagatacggctccttaacgctcccccttagccacaacatggactt gaagtacctggctggagcggaccctgagctcatcctgctcaacattaaatttgaagaacttcagagaatcccattgagtg acatgagccgggaagagataaaccagctgatgcaagaattgggattctaccggaaagacacgccggactcccctgttccc gacgctttccaaatggcgcccgctaattccctgccatcagatgtggaagcaatgaagaacagacatgcaaaagaaaaaaa gggggcggggagtccagacctatagaattcgacgtgctctgcttgtgaagggtgcctgttggaaagaatgggaagtctca gggcattggcaatatctaaataatctgcaactatatagataagatctcctgtggttcacacacggctgaattgtgctgcc ggagaaattaacctttagagaagattcaaaagccgcaaacttttgcttaaggggaagaacttgctgccctcagaaggaaa atgtgcaaaacaaagacagccacatatatgcaacccccgggccggttacaaacagcccttgacttacgaccacaatcgag attggaaaaaaacgttgttaagcatgtgcagttgtcaagcaagacacccacatggctgtgattgtgactttccccgcctg cttcgccatttgctttgggcttgtcggaagccggttgggaaaggttgcaaatggcgattgtgtgacttgcagcattcacc gactgtggtgaagggcaagccaacgaccaacaatcacaacagcccttgtcaaatggtcgtcagtcgagggctgcctgtaa ctcggacgaaattgactggaagaagcctcaagggattccgcccttcaccccaagacgggcatccttgcacaaggcatcac acaagggtccactcccgtgaccagcactttccctccaggtgtgcctcacctgtgcaggacaggatgaagccctctgcaga aagcttttgctgctgagggtggatagacacgtcctctcgggctgggagcgcagcctgccggggagcaggtcgccgaaccc caactggtttaggatagtaacaataaagttgccttcgtcaaccagcaga |
Protein
Protein ID | habu1_s2696_g09642.t1 |
---|---|
Definition | - |
>habu1_s2696_g09642.t1 MDLKYLAGADPELILLNIKFEELQRIPLSDMSREEINQLMQELGFYRKDTPDSPVPDAFQMAPANSLPSDVEAMKNRHAK EKKGAGSPDL |