Gene
| Gene Model ID | habu1_s2740_g09754 |
|---|---|
| Locus | habu1_scaffold2740 : 96036 ... 150777 : + |
| To GenomeBrowser | habu1_scaffold2740:96036..150777 |
| Genes list of scaffold | habu1_scaffold2740 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2740_g09754.t2 | 1 | 1 | SSDP | 32 | 309 | 0.0 | 392.3 | 0.0 | 0.0 | 392.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2740_g09754.t2 | gi|602634186|ref|XP_007423966.1| | PREDICTED: single-stranded DNA-binding protein 3 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2740_g09754.t2 | gi|701299406|ref|XP_010010095.1| | PREDICTED: single-stranded DNA-binding protein 3, partial [Nestor notabilis] | 0.0 |
| habu1_s2740_g09754.t2 | gi|530582138|ref|XP_005284917.1| | PREDICTED: single-stranded DNA-binding protein 3 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s2740_g09754.t2 | gi|529426419|ref|XP_005233041.1| | PREDICTED: single-stranded DNA-binding protein 3 [Falco peregrinus] | 0.0 |
| habu1_s2740_g09754.t2 | gi|564228413|ref|XP_006258657.1| | PREDICTED: single-stranded DNA-binding protein 3 isoform X1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 13.3 |
| Venom grand-1 | 22.4 |
| Pit, infrared sensing | 12.0 |
| Nose | 13.4 |
| Brain-1 | 11.5 |
| Eye | 11.4 |
| fetal fibroblast | 21.3 |
| venom gland-2 | 39.5 |
| Brain-2 | 11.6 |
| Spleen | 5.6 |
| Lung | 12.7 |
| Liver | 3.9 |
| Kidney | 6.3 |
| Pancreas | 8.7 |
| Small intestine | 9.2 |
| Large intestine | 15.1 |
| Stomach | 6.6 |
| heart | 15.0 |
| ovary | 21.7 |
| cheek muscle | 5.9 |
Transcript
| Transcript ID | habu1_s2740_g09754.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09754.t1 aagtcaaggactttccttgcccgggagcgccgcgcatgcgtggttccgccccctgcgccggccgaggcgtagctggcaag cggcagagacggagcaggccgaccaccagctggcccagctcaagggagagtgcagctgcagcgccaagtccagtacttgg aaacattcctccgaatgatggcatgccaggaggacccatacctcccggtttctttcagggaccgcctggctctcagccct caccacacgcacagcctccacctcacaaccccaacagcatgatgggaccccacagtcagccttttatgtcaccgagatac gcaggaggcccacggccccccattagaatgggaaaccagcctccaggaggtgttcctggtacacagccattgctgcccaa ctccatggaccctacacggcaacaagggcatcccaacatgggtgggccgatgcaaaggatgaatcctcctcgaggaatgg gaccgatgggcccaggtccacagactgatccttggttatcattgcagaactatggcggcgggatgagacctccacccaac tctctagggcccggcatgcctgggattaacatgggtccaggagctggtagaccatggcccaatcccaacagcgctaactc aattccatattcttcttcatcacctggtacatatgtggggccccctggtggcggaggtcctcctggaacacccatcatgc ctagccctgcagattcgacaaattcaagtgacaacatctacacaatgattaatcctgtaccgcctggaggcagtcggtcg aatttcccaatggggcctggatcagatggccccatgggaggcatgggtgggatggaaccccatcacatgaatggctcatt agggtcaggagacattgatggacttcccaaaaattctccaaacaacataagtggcattagcaatcctccgggcactccac gcgatgatggtgaactgggaggcaacttcctccattccttccaaaatgacaactattctcccagcatgacaatgagtgtg tgatttccctcttccttcacccccacgtcctcttctccaggataaagaaaaagtcggctgccctttggaggatctcaaga aattatgcaagaagagaagaagctaggtgcatttggcagggagacattcaaagccgggggatccagccctaatttttagt ttcatgcaataaaaaggctgaactttttattccat |
|
| Transcript ID | habu1_s2740_g09754.t2 |
| Definition | - |
>habu1_s2740_g09754.t2 aagtcaaggactttccttgcccgggagcgccgcgcatgcgtggttccgccccctgcgccggccgaggcgtagctggcaag cggcagagacggagcaggccgaccaccagctggcccagctcaagggagagtgcagctgcagcgccaagtccagtacttgg aaacattcctccgaatgatggcatgccaggaggacccatacctcccggtttctttcagggaccgcctggctctcagccct caccacacgcacagcctccacctcacaaccccaacagcatgatgggaccccacagtcagccttttatgtcaccgagatac gcaggaggcccacggccccccattagaatgggaaaccagcctccaggaggtgttcctggtacacagccattgctgcccaa ctccatggaccctacacggcaacaagggcatcccaacatgggtgggccgatgcaaaggatgaatcctcctcgaggaatgg gaccgatgggcccaggtccacagaactatggcggcgggatgagacctccacccaactctctagggcccggcatgcctggg attaacatgggtccaggagctggtagaccatggcccaatcccaacagcgctaactcaattccatattcttcttcatcacc tggtacatatgtggggccccctggtggcggaggtcctcctggaacacccatcatgcctagccctgcagattcgacaaatt caagtgacaacatctacacaatgattaatcctgtaccgcctggaggcagtcggtcgaatttcccaatggggcctggatca gatggccccatgggaggcatgggtgggatggaaccccatcacatgaatggctcattagggtcaggagacattgatggact tcccaaaaattctccaaacaacataagtggcattagcaatcctccgggcactccacgcgatgatggtgaactgggaggca acttcctccattccttccaaaatgacaactattctcccagcatgacaatgagtgtgtgatttccctcttccttcaccccc acgtcctcttctccaggataaagaaaaagtcggctgccctttggaggatctcaagaaattatgcaagaagagaagaagct aggtgcatttggcagggagacattcaaagccgggggatccagccctaatttttagtttcatgcaataaaaaggctgaact ttttattccat |
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Protein
| Protein ID | habu1_s2740_g09754.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09754.t1 MRGSAPCAGRGVAGKRQRRSRPTTSWPSSRESAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPN SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGPMQRMNPPRGMGPMGPGPQTDPW LSLQNYGGGMRPPPNSLGPGMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDN IYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLH SFQNDNYSPSMTMSV |
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| Protein ID | habu1_s2740_g09754.t2 |
| Definition | - |
>habu1_s2740_g09754.t2 MRGSAPCAGRGVAGKRQRRSRPTTSWPSSRESAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPN SMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGPMQRMNPPRGMGPMGPGPQNYGG GMRPPPNSLGPGMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPV PPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYS PSMTMSV |
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