Gene
| Gene Model ID | habu1_s2740_g09762 |
|---|---|
| Locus | habu1_scaffold2740 : 308346 ... 317065 : - |
| To GenomeBrowser | habu1_scaffold2740:308346..317065 |
| Genes list of scaffold | habu1_scaffold2740 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: type i iodothyronine deiodinase | GO:0008152 GO:0016491 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2740_g09762.t1 | 2 | 1 | T4_deiodinase | 3 | 66 | 0.0 | 201.9 | 1.3e-17 | 2.0e-13 | 49.9 |
| habu1_s2740_g09762.t1 | 2 | 2 | T4_deiodinase | 68 | 167 | 0.0 | 201.9 | 0.0 | 2.94273e-44 | 150.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2740_g09762.t1 | gi|602653851|ref|XP_007432777.1| | PREDICTED: LOW QUALITY PROTEIN: type I iodothyronine deiodinase [Python bivittatus] | 0.0 |
| habu1_s2740_g09762.t1 | gi|637295083|ref|XP_003220351.2| | PREDICTED: LOW QUALITY PROTEIN: type I iodothyronine deiodinase [Anolis carolinensis] | 0.0 |
| habu1_s2740_g09762.t1 | gi|723141386|ref|XP_010287640.1| | PREDICTED: LOW QUALITY PROTEIN: type I iodothyronine deiodinase [Phaethon lepturus] | 0.0 |
| habu1_s2740_g09762.t1 | gi|558210234|ref|XP_006133519.1| | PREDICTED: LOW QUALITY PROTEIN: type I iodothyronine deiodinase [Pelodiscus sinensis] | 0.0 |
| habu1_s2740_g09762.t1 | gi|701327813|ref|XP_009976213.1| | PREDICTED: LOW QUALITY PROTEIN: type I iodothyronine deiodinase [Tauraco erythrolophus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.0 |
| Brain-1 | 0.0 |
| Eye | 0.0 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.0 |
| Spleen | 0.3 |
| Lung | 0.0 |
| Liver | 4.6 |
| Kidney | 57.1 |
| Pancreas | 1.5 |
| Small intestine | 22.8 |
| Large intestine | 15.2 |
| Stomach | 8.3 |
| heart | 0.0 |
| ovary | 0.0 |
| cheek muscle | 0.3 |
Transcript
| Transcript ID | habu1_s2740_g09762.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09762.t1 ggccgagggatccagcattgtctgaagacagtttctgtggtcgtgtggctaacatggctatgtgccaaaggagcacgtta ctcagaagtaactttgttgaatttagaggcattacctgtatggatttgtgcattggtttgttgcctaaccttttcaccaa agacttatctttctttccagtccttatctgaataccattatctgggtttaaagcagtacagtaataaaatcagggcaata aaaacaagtttttctgtccttgaactatagctgtctcagccgctttttttaatattggttacatcataggtactgtgaag agatatctcctgaagcagagagaaaagagtagcaacccaaaattcatgtatgaaaattggggtccaactttcttcagttt cccatacttactctttgtcttgaaagtcaaatggaaaaggctggaagatgaagcctttcagggctgtcctgctcctaaca cccctgtagcagatctcagtgggaaaattcatcgcattctggatttcatgcaaggtaacaggcctttggttctaacattt ggaacagactttcttgtaatctacattgaagaagctcatgcctcagatggatgggcctttaagaacaatattgtcattaa aagtcaccgaaccctccaagatcgtatagcggctacacagatgctcctaaaacagaatcctttatgtccagtggttttag acacaatggaaaacctgagcagcaacaaatatgctgctctgcctgagagactgtatgtgcttcaaaagggaaaagttgtg tataagggtagaccaggaccttggaagtattgcccacaagaagttcgtgaatttttggaacaattttatatgtaaaaaaa cacctcaatgcaatctatttgtgagcagcacgtacactccattgcctgattacatttttaaaagtatttttatttgtaaa aggctgtatttatttggaaacataatggtgaaaaccttacatcattaatattcagcagtcatgaactctcaattaaacaa taacttaagatctatttaa |
|
Protein
| Protein ID | habu1_s2740_g09762.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09762.t1 MYENWGPTFFSFPYLLFVLKVKWKRLEDEAFQGCPAPNTPVADLSGKIHRILDFMQGNRPLVLTFGTDFLVIYIEEAHAS DGWAFKNNIVIKSHRTLQDRIAATQMLLKQNPLCPVVLDTMENLSSNKYAALPERLYVLQKGKVVYKGRPGPWKYCPQEV REFLEQFYM |
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