Gene
| Gene Model ID | habu1_s2740_g09764 |
|---|---|
| Locus | habu1_scaffold2740 : 329516 ... 351481 : + |
| To GenomeBrowser | habu1_scaffold2740:329516..351481 |
| Genes list of scaffold | habu1_scaffold2740 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nucleoporin ndc1 isoform x1 | GO:0005643 GO:0005737 GO:0007129 GO:0007283 GO:0017056 GO:0031081 GO:0051292 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2740_g09764.t2 | 1 | 1 | Ndc1_Nup | 12 | 580 | 0.0 | 538.2 | 0.0 | 0.0 | 533.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2740_g09764.t2 | gi|602653863|ref|XP_007432783.1| | PREDICTED: nucleoporin NDC1 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2740_g09764.t2 | gi|530582106|ref|XP_005284901.1| | PREDICTED: nucleoporin NDC1 isoform X5 [Chrysemys picta bellii] | 0.0 |
| habu1_s2740_g09764.t2 | gi|512939349|ref|XP_004908852.1| | 0.0 | |
| habu1_s2740_g09764.t2 | gi|513027138|ref|XP_004874720.1| | PREDICTED: nucleoporin NDC1 [Heterocephalus glaber] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.0 |
| Venom grand-1 | 14.1 |
| Pit, infrared sensing | 7.1 |
| Nose | 6.8 |
| Brain-1 | 3.6 |
| Eye | 5.0 |
| fetal fibroblast | 16.1 |
| venom gland-2 | 7.8 |
| Brain-2 | 2.9 |
| Spleen | 6.9 |
| Lung | 6.3 |
| Liver | 12.1 |
| Kidney | 71.4 |
| Pancreas | 12.6 |
| Small intestine | 4.3 |
| Large intestine | 4.9 |
| Stomach | 6.1 |
| heart | 3.5 |
| ovary | 28.9 |
| cheek muscle | 3.1 |
Transcript
| Transcript ID | habu1_s2740_g09764.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09764.t1 gtaccgttcactgcccttttttttgcaccatgggagatgtttcaacgcgggaacaactcagtatcttaagatggagagca acagcaagcattgcttggtctgtgctgttgcttcctctgtgtgtggcagtgttcatcatcattagcagtattgatctctt ccatcctgttcagtggatcacaaattctttcaatgatttgtatacgtcctatgtgatcttttgcatactactgctgtctg tggtgatactggtaataaatgtcttcaatgttcagtttcacgcagttgtgccttctattcactgctcccgattagcccta ataagcaagattatccacccgcagcaggtgatccattcaattgcccatgctgtgatggggatgctggtggcttggtgtgc tgcagttatgaccaaggggaagttcctctttttgtccatgccctgcacagctacaactacagaaagtgctgctgatgcta cccttcgcacgtgcctgaatgaatatcatctcttcattttgctccttggagcttttatgggttatagttacagtctccga tatcttatccacaatttgaactacctcccatttcctgccatacaacagtacaagtatctgcgcttcagaagatctcttcc actactggcaaaacatagttgtgtggagtcattttatatggttaggaacttctgtgctgtttattacttctttggttaca ttccaaggacctggataatgaccacaatgaacattcggcctgatagcaatcttcctcttctagacacagtggctggtctc ctggatttgtctcttctgtatcatagctggttatgtggtctgtttctactcatgacttggtacatcgcatggcttctctt cagaattttttcaaccgaggcacatcactttccagtccagccaacctttgcagaagaagcagaccagtgtttacctaaaa tcttaaacaacaaccctccaccccttttaaagtttttagctttacaggacctgatgtttctttctcaatattcttctatg cgtcgtcaagcggtctttagcctcagccaaccaggtggacatccatacaactggacttcaatttgcggggagtgtttgaa ccttctaagtgaactgacacaaaaactgataatccagcaagagattgcagctgcaaatggaagaatgaaacagccatccc caggagacttgacacagtccttcagttctctagctcctgaaggaagctcatttcagacgccaaggaccagcatatttcct cgagcccacatgcattccctggttaaatcgtctctgttgcccttaaaaacatcacctgcatctgaccttggaagcaattt aggatcaccttttaatacctcccttttgggtcataagcctggactgttggagttaaactctccttggcacggatctgtcc aaagtccccatattatgagaagaggaccaaaactatggacatcaagttcagatctgcaattgacaggctatcctgatcaa cctcgcccagtgatggtggttgcaaaagatgctaaggaagcagcacagccaggttctttctatatatggttgcagaacaa gaaagagcagatcaaaaatttcctgtcaaaacgagtcctgataatgtattttttcaacaagcaccctgaagcatcaatcc aagcattgttttcagatacccaaatgcatatttgggctttggaaggtttatcgcatcttgtagcagcctcatttactgaa gatagatatggtgttgttcagacgacactgccagcaattctgaattccttgctaactcttcaggaggttatagacaaaca cttcaaacttcctcatgtgtccagcaaacctccaaaaagtccaggaaatcttgcagacacttcctataagacccttcgat ttgctttgagatcatcattaaaaactgcaatctatcggataaccaccacctttggagaacatttaaatgcagtgcaagtc tcttcagaacataagaaaagactgcagcaattcttggagttcaaagaatagagaagccaaattgcacacaccgttggaga tggaatcagatctcagatctatcacactggcttctcaaatgtgtacttttttttttctttttgacaactcataagttgat gtgtatgtattttgaaatacatacacatgtatttttttaaaacttttggattgttttactctgatattttgtataataaa aaagatatttaaactaaaaaca |
|
| Transcript ID | habu1_s2740_g09764.t2 |
| Definition | - |
>habu1_s2740_g09764.t2 gtaccgttcactgcccttttttttgcaccatgggagatgtttcaacgcgggaacaactcagtatcttaagatggagagca acagcaagcattgcttggtctgtgctgttgcttcctctgtgtgtggcagtgttcatcatcattagcagtattgatctctt ccatcctgttcagtggatcacaaattctttcaatgatttgtatacgtcctatgtgatcttttgcatactactgctgtctg tggtgatactggtaataaatgtcttcaatgttcagtttcacgcagttgtgccttctattcactgctcccgattagcccta ataagcaagattatccacccgcagcaggtgatccattcaattgcccatgctgtgatggggatgctggtggcttggtgtgc tgcagttatgaccaaggggaagttcctctttttgtccatgccctgcacagctacaactacagaaagtgctgctgatgcta cccttcgcacgtgcctgaatgaatatcatctcttcattttgctccttggagcttttatgggttatagttacagtctccga tatcttatccacaatttgaactacctcccatttcctgccatacaacagtacaagtatctgcgcttcagaagatctcttcc actactggcaaaacatagttgtgtggagtcattttatatggttaggaacttctgtgctgtttattacttctttggttaca ttccaaggacctggataatgaccacaatgaacattcggcctgatagcaatcttcctcttctagacacagtggctggtctc ctggatttgtctcttctgtatcatagctggttatgtggtctgtttctactcatgacttggtacatcgcatggcttctctt cagaattttttcaaccgaggcacatcactttccagtccagccaacctttgcagaagaagcagaccagtgtttacctaaaa tcttaaacaacaaccctccaccccttttaaagtttttagctttacaggacctgatgtttctttctcaatattcttctatg cgtcgtcaagcggtctttagcctcagccaaccaggtggacatccatacaactggacttcaatttgcggggagtgtttgaa ccttctaagtgaactgacacaaaaactgataatccagcaagagattgcagctgcaaatggaagaatgaaacagccatccc caggagacttgacacagtccttcagttctctagatctgcaattgacaggctatcctgatcaacctcgcccagtgatggtg gttgcaaaagatgctaaggaagcagcacagccaggttctttctatatatggttgcagaacaagaaagagcagatcaaaaa tttcctgtcaaaacgagtcctgataatgtattttttcaacaagcaccctgaagcatcaatccaagcattgttttcagata cccaaatgcatatttgggctttggaaggtttatcgcatcttgtagcagcctcatttactgaagatagatatggtgttgtt cagacgacactgccagcaattctgaattccttgctaactcttcaggaggttatagacaaacacttcaaacttcctcatgt gtccagcaaacctccaaaaagtccaggaaatcttgcagacacttcctataagacccttcgatttgctttgagatcatcat taaaaactgcaatctatcggataaccaccacctttggagaacatttaaatgcagtgcaagtctcttcagaacataagaaa agactgcagcaattcttggagttcaaagaatagagaagccaaattgcacacaccgttggagatggaatcagatctcagat ctatcacactggcttctcaaatgtgtacttttttttttctttttgacaactcataagttgatgtgtatgtattttgaaat acatacacatgtatttttttaaaacttttggattgttttactctgatattttgtataataaaaaagatatttaaactaaa aaca |
|
Protein
| Protein ID | habu1_s2740_g09764.t1 |
|---|---|
| Definition | - |
>habu1_s2740_g09764.t1 MGDVSTREQLSILRWRATASIAWSVLLLPLCVAVFIIISSIDLFHPVQWITNSFNDLYTSYVIFCILLLSVVILVINVFN VQFHAVVPSIHCSRLALISKIIHPQQVIHSIAHAVMGMLVAWCAAVMTKGKFLFLSMPCTATTTESAADATLRTCLNEYH LFILLLGAFMGYSYSLRYLIHNLNYLPFPAIQQYKYLRFRRSLPLLAKHSCVESFYMVRNFCAVYYFFGYIPRTWIMTTM NIRPDSNLPLLDTVAGLLDLSLLYHSWLCGLFLLMTWYIAWLLFRIFSTEAHHFPVQPTFAEEADQCLPKILNNNPPPLL KFLALQDLMFLSQYSSMRRQAVFSLSQPGGHPYNWTSICGECLNLLSELTQKLIIQQEIAAANGRMKQPSPGDLTQSFSS LAPEGSSFQTPRTSIFPRAHMHSLVKSSLLPLKTSPASDLGSNLGSPFNTSLLGHKPGLLELNSPWHGSVQSPHIMRRGP KLWTSSSDLQLTGYPDQPRPVMVVAKDAKEAAQPGSFYIWLQNKKEQIKNFLSKRVLIMYFFNKHPEASIQALFSDTQMH IWALEGLSHLVAASFTEDRYGVVQTTLPAILNSLLTLQEVIDKHFKLPHVSSKPPKSPGNLADTSYKTLRFALRSSLKTA IYRITTTFGEHLNAVQVSSEHKKRLQQFLEFKE |
|
| Protein ID | habu1_s2740_g09764.t2 |
| Definition | - |
>habu1_s2740_g09764.t2 MGDVSTREQLSILRWRATASIAWSVLLLPLCVAVFIIISSIDLFHPVQWITNSFNDLYTSYVIFCILLLSVVILVINVFN VQFHAVVPSIHCSRLALISKIIHPQQVIHSIAHAVMGMLVAWCAAVMTKGKFLFLSMPCTATTTESAADATLRTCLNEYH LFILLLGAFMGYSYSLRYLIHNLNYLPFPAIQQYKYLRFRRSLPLLAKHSCVESFYMVRNFCAVYYFFGYIPRTWIMTTM NIRPDSNLPLLDTVAGLLDLSLLYHSWLCGLFLLMTWYIAWLLFRIFSTEAHHFPVQPTFAEEADQCLPKILNNNPPPLL KFLALQDLMFLSQYSSMRRQAVFSLSQPGGHPYNWTSICGECLNLLSELTQKLIIQQEIAAANGRMKQPSPGDLTQSFSS LDLQLTGYPDQPRPVMVVAKDAKEAAQPGSFYIWLQNKKEQIKNFLSKRVLIMYFFNKHPEASIQALFSDTQMHIWALEG LSHLVAASFTEDRYGVVQTTLPAILNSLLTLQEVIDKHFKLPHVSSKPPKSPGNLADTSYKTLRFALRSSLKTAIYRITT TFGEHLNAVQVSSEHKKRLQQFLEFKE |
|