Gene
| Gene Model ID | habu1_s2789_g09956 |
|---|---|
| Locus | habu1_scaffold2789 : 47437 ... 57735 : - |
| To GenomeBrowser | habu1_scaffold2789:47437..57735 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 3-alpha isoform x1 | EC:5.99.1.2 GO:0003677 GO:0003917 GO:0005694 GO:0006265 GO:0008270 GO:0016605 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g09956.t1 | 1 | 1 | Toprim | 17 | 118 | 1.8e-14 | 53.5 | 4.3e-17 | 1.1e-13 | 51.0 |
| habu1_s2789_g09956.t1 | 1 | 1 | Topoisom_bac | 134 | 543 | 0.0 | 340.0 | 0.0 | 0.0 | 338.7 |
| habu1_s2789_g09956.t1 | 1 | 1 | zf-C4_Topoisom | 592 | 630 | 5.5e-11 | 41.7 | 2.2e-14 | 5.5e-11 | 41.7 |
| habu1_s2789_g09956.t1 | 2 | 1 | zf-GRF | 748 | 788 | 3.0e-36 | 123.0 | 9.9e-20 | 2.5e-16 | 59.3 |
| habu1_s2789_g09956.t1 | 2 | 2 | zf-GRF | 832 | 875 | 3.0e-36 | 123.0 | 2.6e-22 | 6.5e-19 | 67.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g09956.t1 | gi|602636516|ref|XP_007425112.1| | PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2789_g09956.t1 | gi|602636518|ref|XP_007425113.1| | PREDICTED: DNA topoisomerase 3-alpha isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2789_g09956.t1 | gi|602636520|ref|XP_007425114.1| | PREDICTED: DNA topoisomerase 3-alpha isoform X3 [Python bivittatus] | 0.0 |
| habu1_s2789_g09956.t1 | gi|637360532|ref|XP_003228350.2| | PREDICTED: DNA topoisomerase 3-alpha isoform X3 [Anolis carolinensis] | 0.0 |
| habu1_s2789_g09956.t1 | gi|637360522|ref|XP_008120111.1| | PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Anolis carolinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.4 |
| Venom grand-1 | 1.4 |
| Pit, infrared sensing | 1.8 |
| Nose | 1.6 |
| Brain-1 | 1.1 |
| Eye | 1.8 |
| fetal fibroblast | 3.0 |
| venom gland-2 | 1.1 |
| Brain-2 | 1.0 |
| Spleen | 1.6 |
| Lung | 1.6 |
| Liver | 0.9 |
| Kidney | 0.9 |
| Pancreas | 0.9 |
| Small intestine | 0.8 |
| Large intestine | 1.4 |
| Stomach | 1.0 |
| heart | 0.9 |
| ovary | 4.0 |
| cheek muscle | 0.9 |
Transcript
| Transcript ID | habu1_s2789_g09956.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09956.t1 gcgaaatacggctgggagctgaagcgagaagggaaagggggttctgggagggggagcagatcaaaaaaaccccaccccgt ctggacagcgaaggggccccgggggggtgaagggcctgacaggcgggggaggggcctgctggaggagggtctcacagact tggggggcagccctgacttgcaggctaagggggcgcagaggaggggctgggttaggcttggggcaccaggggagggggag atccccatggcagagaggcggggggtcagacaggtgggtggctagaagggccgagctcagcctgttacttggggatctgg ggaggagagacgggtgcctgagcccccagtgcccccctccccaatagcctggggttgccccgcggtgttcctaagggaag gggcacccctggctgctgcccttggatccagagcttccgcttcagggaacattgggggtctccccacccacctctgtgac ctggggaaactcgggggaccagcccccctaggagccttgcatcccgaagaagggatccactctctttcggactgggccag agttctcctcccttggcgacaccttcattgcctgggaaaggagctgccaaggccccacgatgggccggccgtctgggttc taggatgttcggtcaggccagaggattggcttggggaaccgtgaagttcttctcctggtcctccaacctttggttcaggc cgacggcgaagaccatgacgcttcgcaacctccagaaggttctctgtgtggcagagaaaaacgatgcagcccgtgggatt gcagacatcctttcgaacagcaggatgaggaggagggaaggaatgtccaagttcaacaagatctatgaattccagtatca cttgtttaaccagaatgtaactttgattatgacatctgtgtccggacacttgctgactcaggatttcaaggcaccatttc ggaaatggcatagctgtaaccccttggtccttttcgatgcagaaattgagaaattctgccctgaaaactacatggacatt aagcgcactcttgagcgagaggttcagccttgccaggccctggtgatctggaccgattgtgatcgcgaaggggagaacat tggctttgaaatcattcacgtgtgtaaagcagtgaagccaaacctgcaggtgttccgagcccgcttctcggagatcacac cccgggctatccagtctgcttgcgagaacctcacccagccagatccgaacaccaacgatgctgtggaggtgaggcaagag ctggacctcagaataggtgctgcctttacccggttccagaccttgaggcttcagaagatcttcccggaagtgttagcaga acagctcattagctacggcagttgtcagttccccaccctgggcttcgtggtagaaagattcaaagctattgaagctttcg ttcaagaaacattctacaaaattaaagtgactcatgaccatgaagaaggtactgtggacttcagctggaagaggcaccgt ctcttcaaccacacggcgtgccttgtcctctaccagatgtgcatggaggatcctcaggccaccgttgtggaggttggaag caaacccaagagcaaatggagacctctgccgctggacacggtggaacttgagaaattggcttcccgtaagctgaaaataa atgccaaggaaaccatgaagattgccgagaagctgtatacccaagggtacataagttacccccgaacagagaccaacatt ttccccaaagacctaaacctctcccagctggtgcagcttcagactcaagacccccactggggagcctttgcgcaaaggat cctggaccaaggcaggccaaccccacggcagggggcaaagtcagatcaggctcaccctcccattcaccccaccaaatacg ccggtaatttgcagggcaacgaccagcgcctgtatgaattcatcgtccgccacttcctggcctgctgttctgaagatgcg aaggggcgggaaaccatggtggagatcgatatatcctacgagcgcttcgtggctcacgggctgatgatcctggccagaaa ttacctggacgtttacccttacgaaaggtggagtgacaaggttatccccctctatgagaagggctcctgcttccaaccca ccacggtggagatggtggaaggggagaccagcccgccccagctgctcaccgaagctgatctcatttccctgatggagaga cacggcatcggaaccgacgccacccacgcggaacacatcgagaccatcaagtcccgcatgtacgtggggctcaccccgga ccagcgcttccttccgggacacctggggatggggctggtggaaggctacgactccatgggctacgagatgtccaaaccgg atcttcgagccgaactggaaaacgacctgaagctgatctgcgaggggaagaaggacaagtccgtcgtgctccgagagcag atccagaaatataagcaagtctttgtggccgccgtggccaaggctaaaaagttggatgaggctttggctcagtattttgg ggagatgacccaggtggcacaggaggatgacatttacccagcgatgcccgatccggttaggaaatgcccgcagtgcaact ccgacatgatcctgaagaccaggaagaacggaggcttctatctcagctgcttgggctaccctgcttgtaaatcctcggtc tggtttcctgattccgtgctggaagtcagcaaggatgattctgtctgcgacgtctgcaggccgcccccggtgcatcggct gaaactgaagttcaagcgaggcagtctcccggccatgatgcctctcgagtttgtgggttgcatcggtggctgtgatgaaa acctcaggcagatcctagacctgaagtacctgcaaggaccagccagggttccagcccagccgaggaatctccccagcgaa gcccctggctccctcagtggcgcgatccacagccgtggccagcgcgtgcttgctcgggcaccccctcctgcccccgcaca caggactcctccagcgctcaccaatgaggacgagaacaatgccgtggtgtgcaattgtggccaggaggccctgcttctca ccgtccgcaaagaagggcccaaccaaggcaggcagttttacaaatgcaacaccggcagctgccgattcttcctgtggtct gaccagcaggagcccaacaacgggacatctgggctcctggcaccgcctcccagctcttccctgccagggcaaagaaccgc agcagggcccaggagggtgggctccaatcccggagccagcgctggccgaggaagccctctctgcaggtgtgagcagcccg cggtgcccaggacggtccagaaagaaggacccaacaaggggcgccagttccacacctgctccaagccgagggagcagcag tgcggctttttcgagtgggcagatgagagcgtgttgccagctccctccaccttcccttctagccacttcgggggcgagtg ggccaaacggggccctggggccaaagcgaaaagatcagacagcgattcctctttgacggcacctctgaagagaccacgga cgtgcagcgtttgccaccagcctggccacaccaagaccacgtgtccacaaaatcactgaagcgacgtggcccacgccgag cctaggccgatgggccagggagactcgagacggcccgtttgcaaacgagagcctcgcgagggggtgacgtggacttctga aagatcaggctttcctccaccttaagtttttaaatataagtggaattatggaagatttga |
|
Protein
| Protein ID | habu1_s2789_g09956.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09956.t1 MSKFNKIYEFQYHLFNQNVTLIMTSVSGHLLTQDFKAPFRKWHSCNPLVLFDAEIEKFCPENYMDIKRTLEREVQPCQAL VIWTDCDREGENIGFEIIHVCKAVKPNLQVFRARFSEITPRAIQSACENLTQPDPNTNDAVEVRQELDLRIGAAFTRFQT LRLQKIFPEVLAEQLISYGSCQFPTLGFVVERFKAIEAFVQETFYKIKVTHDHEEGTVDFSWKRHRLFNHTACLVLYQMC MEDPQATVVEVGSKPKSKWRPLPLDTVELEKLASRKLKINAKETMKIAEKLYTQGYISYPRTETNIFPKDLNLSQLVQLQ TQDPHWGAFAQRILDQGRPTPRQGAKSDQAHPPIHPTKYAGNLQGNDQRLYEFIVRHFLACCSEDAKGRETMVEIDISYE RFVAHGLMILARNYLDVYPYERWSDKVIPLYEKGSCFQPTTVEMVEGETSPPQLLTEADLISLMERHGIGTDATHAEHIE TIKSRMYVGLTPDQRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELENDLKLICEGKKDKSVVLREQIQKYKQVFVAAVAK AKKLDEALAQYFGEMTQVAQEDDIYPAMPDPVRKCPQCNSDMILKTRKNGGFYLSCLGYPACKSSVWFPDSVLEVSKDDS VCDVCRPPPVHRLKLKFKRGSLPAMMPLEFVGCIGGCDENLRQILDLKYLQGPARVPAQPRNLPSEAPGSLSGAIHSRGQ RVLARAPPPAPAHRTPPALTNEDENNAVVCNCGQEALLLTVRKEGPNQGRQFYKCNTGSCRFFLWSDQQEPNNGTSGLLA PPPSSSLPGQRTAAGPRRVGSNPGASAGRGSPLCRCEQPAVPRTVQKEGPNKGRQFHTCSKPREQQCGFFEWADESVLPA PSTFPSSHFGGEWAKRGPGAKAKRSDSDSSLTAPLKRPRTCSVCHQPGHTKTTCPQNH |
|