Gene
| Gene Model ID | habu1_s2789_g09958 |
|---|---|
| Locus | habu1_scaffold2789 : 64162 ... 71975 : - |
| To GenomeBrowser | habu1_scaffold2789:64162..71975 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| serine cytosolic | EC:2.1.2.1 GO:0004372 GO:0005634 GO:0005739 GO:0005829 GO:0006544 GO:0006565 GO:0009113 GO:0030170 GO:0035999 GO:0042803 GO:0046655 GO:0051262 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g09958.t1 | 1 | 1 | SHMT | 28 | 426 | 0.0 | 698.6 | 0.0 | 0.0 | 698.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g09958.t1 | gi|602636512|ref|XP_007425110.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2789_g09958.t1 | gi|327287268|ref|XP_003228351.1| | PREDICTED: LOW QUALITY PROTEIN: serine hydroxymethyltransferase, cytosolic [Anolis carolinensis] | 0.0 |
| habu1_s2789_g09958.t1 | gi|530590795|ref|XP_005289056.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Chrysemys picta bellii] | 0.0 |
| habu1_s2789_g09958.t1 | gi|591370592|ref|XP_007060119.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Chelonia mydas] | 0.0 |
| habu1_s2789_g09958.t1 | gi|558178184|ref|XP_006126647.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.3 |
| Venom grand-1 | 12.6 |
| Pit, infrared sensing | 19.1 |
| Nose | 7.7 |
| Brain-1 | 1.3 |
| Eye | 10.4 |
| fetal fibroblast | 19.1 |
| venom gland-2 | 8.6 |
| Brain-2 | 1.1 |
| Spleen | 26.3 |
| Lung | 38.8 |
| Liver | 1166.6 |
| Kidney | 551.7 |
| Pancreas | 82.0 |
| Small intestine | 278.3 |
| Large intestine | 39.6 |
| Stomach | 28.7 |
| heart | 6.1 |
| ovary | 9.5 |
| cheek muscle | 8.2 |
Transcript
| Transcript ID | habu1_s2789_g09958.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09958.t1 gcgcgctgattggctgcggcgcgggacagaaagtgctgaacgttccatcccccgagcgcgcggggcctcgtggatttaag cccggagtctgcagggaggcgcctctttttcgcgggggcgtccgccgttgcaccgaggatcccagctcctagtacttcca gctgccatggccaacacaaacgcaggtggagaccatgtcaccaagaacctctggctctcccacaacaagatggtgatgga agccctggacaccaatgaccccgaggtctacgatattatcaagaaggagaaaaggcgacagagacttgggttggagctga tcgcgtctgaaaactttgccagccgagccgttctggaggcgttgggctcctgcctgaacaacaaatactcagaaggatat ccggggcaaagatactacggtgggacagaatttgtcgatgagttggaaagactttgccagaagagagccctggaggccta tgggctagacccacagaagtggggcgtcaacgtccagccttattcagggtctcctgcaaactttgccgtgtacactgccc tggttgagccccatgggaggatcatgggcttggatctgccagatgggggtcacctcacacatggcttcatgaccgacaag aagaaaatctctgccacatccatcttctttgagtccatgccttacaaggtcaaccctgaaacgggctacatcgactatga tcgattggaggagaacgcccgcctgtttcatccaaagctgatcattgcaggggtcagctgctactcccggaatttggact atgccaggatgaggaagatcgcggacgagaacagcgcctacctcatggctgacatggcccacatcagcggcttggtggca gccggcgtggtgccctcccccttccagcactgtgacgtggtctccaccaccacccacaaaaccttgcggggctgccgagc tggcatgatcttctaccggaaaggtgtccgcagcgtcgaccccaaaacggggaaggaggtcctgtataacctggaaagcc tcatcaatcaggccgtcttccctggtctccaggggggccctcacaatcacgcaattgcaggaattgctgtggctttgaaa caagccatgactcccgaattcaagacctaccagcagcaggtggtggccaactgcaaggctttgtcagctgctctcatcag ctcgggataccacgtcgtcactgggggctccgacaaccacttgatcctcgtcgatctgcgcaaccggggcacggatgggg ggcgagctgaacgggtcctagagctctgcgccatcgcctgcaacaagaatacctgtccaggagacaaaagtgctttgcgt cccagtgggctgagattggggactccggctctcacctcccgaggattcctggaagaagactttaagaaagtcgctcactt cattcacaaaggtatagagctcactttacaggtgcagagcgacatgagccctaaagccaccctgagagaattcaaagaga agctggtgacggagcagaagtaccaagggctgctgaggtccctcaaggaggaggtggagaccttcgctgattccttcccg cttcccggcttgcctgtgttgtaaaggagccacatctggaatggcagcccaccccagctgccctcttgcaatgggaccct cctcctccttcagtgcccctgtctttggtttctcttgggtcgccttctgcttttataatccaatttttagccaattcttt tcctcccctttttaagaagaaaaatgcaccagagctgggaaggaaatggaacaaggacaaatgttagtactaccctctct ggaacggttaatgacagcccagtatttacacacacacacacacgtcttgccagaaaaaaaaacccctattgatggaacag gagaagcatctcttctagagatgctttggagagaaattggccatttagggggaaaaattgttcttcaaactgttttgcat taagttacagaatttattgccacaatttatagggatgacaatggcttaagcaggagtgggccttctgttcaccacacagc ccttccaggaaaccttgtggttggccgtggagggaagcaggaagttaaacaatgcggggatttatttctctcacacacct gagcttgtcccacggattctacttccagtttccaaaaagcagatgtgttgttcaaggaaaggggcacttttaatgacaag ctgagcaacatatttgacaccaactacttcccacttgcggtttatctccccaccacccacagttgccttcactgtactag atgcacaagctcaaagatactgtcaggacagtttttactaagcacaataaaattaagaattttaccacgactg |
|
Protein
| Protein ID | habu1_s2789_g09958.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09958.t1 MANTNAGGDHVTKNLWLSHNKMVMEALDTNDPEVYDIIKKEKRRQRLGLELIASENFASRAVLEALGSCLNNKYSEGYPG QRYYGGTEFVDELERLCQKRALEAYGLDPQKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKK ISATSIFFESMPYKVNPETGYIDYDRLEENARLFHPKLIIAGVSCYSRNLDYARMRKIADENSAYLMADMAHISGLVAAG VVPSPFQHCDVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKEVLYNLESLINQAVFPGLQGGPHNHAIAGIAVALKQA MTPEFKTYQQQVVANCKALSAALISSGYHVVTGGSDNHLILVDLRNRGTDGGRAERVLELCAIACNKNTCPGDKSALRPS GLRLGTPALTSRGFLEEDFKKVAHFIHKGIELTLQVQSDMSPKATLREFKEKLVTEQKYQGLLRSLKEEVETFADSFPLP GLPVL |
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