Gene
Gene Model ID | habu1_s2789_g09958 |
---|---|
Locus | habu1_scaffold2789 : 64162 ... 71975 : - |
To GenomeBrowser | habu1_scaffold2789:64162..71975 |
Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
Annotation | GO |
---|---|
serine cytosolic | EC:2.1.2.1 GO:0004372 GO:0005634 GO:0005739 GO:0005829 GO:0006544 GO:0006565 GO:0009113 GO:0030170 GO:0035999 GO:0042803 GO:0046655 GO:0051262 GO:0070062 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s2789_g09958.t1 | 1 | 1 | SHMT | 28 | 426 | 0.0 | 698.6 | 0.0 | 0.0 | 698.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s2789_g09958.t1 | gi|602636512|ref|XP_007425110.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic isoform X1 [Python bivittatus] | 0.0 |
habu1_s2789_g09958.t1 | gi|327287268|ref|XP_003228351.1| | PREDICTED: LOW QUALITY PROTEIN: serine hydroxymethyltransferase, cytosolic [Anolis carolinensis] | 0.0 |
habu1_s2789_g09958.t1 | gi|530590795|ref|XP_005289056.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Chrysemys picta bellii] | 0.0 |
habu1_s2789_g09958.t1 | gi|591370592|ref|XP_007060119.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Chelonia mydas] | 0.0 |
habu1_s2789_g09958.t1 | gi|558178184|ref|XP_006126647.1| | PREDICTED: serine hydroxymethyltransferase, cytosolic [Pelodiscus sinensis] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 8.3 |
Venom grand-1 | 12.6 |
Pit, infrared sensing | 19.1 |
Nose | 7.7 |
Brain-1 | 1.3 |
Eye | 10.4 |
fetal fibroblast | 19.1 |
venom gland-2 | 8.6 |
Brain-2 | 1.1 |
Spleen | 26.3 |
Lung | 38.8 |
Liver | 1166.6 |
Kidney | 551.7 |
Pancreas | 82.0 |
Small intestine | 278.3 |
Large intestine | 39.6 |
Stomach | 28.7 |
heart | 6.1 |
ovary | 9.5 |
cheek muscle | 8.2 |
Transcript
Transcript ID | habu1_s2789_g09958.t1 |
---|---|
Definition | - |
>habu1_s2789_g09958.t1 gcgcgctgattggctgcggcgcgggacagaaagtgctgaacgttccatcccccgagcgcgcggggcctcgtggatttaag cccggagtctgcagggaggcgcctctttttcgcgggggcgtccgccgttgcaccgaggatcccagctcctagtacttcca gctgccatggccaacacaaacgcaggtggagaccatgtcaccaagaacctctggctctcccacaacaagatggtgatgga agccctggacaccaatgaccccgaggtctacgatattatcaagaaggagaaaaggcgacagagacttgggttggagctga tcgcgtctgaaaactttgccagccgagccgttctggaggcgttgggctcctgcctgaacaacaaatactcagaaggatat ccggggcaaagatactacggtgggacagaatttgtcgatgagttggaaagactttgccagaagagagccctggaggccta tgggctagacccacagaagtggggcgtcaacgtccagccttattcagggtctcctgcaaactttgccgtgtacactgccc tggttgagccccatgggaggatcatgggcttggatctgccagatgggggtcacctcacacatggcttcatgaccgacaag aagaaaatctctgccacatccatcttctttgagtccatgccttacaaggtcaaccctgaaacgggctacatcgactatga tcgattggaggagaacgcccgcctgtttcatccaaagctgatcattgcaggggtcagctgctactcccggaatttggact atgccaggatgaggaagatcgcggacgagaacagcgcctacctcatggctgacatggcccacatcagcggcttggtggca gccggcgtggtgccctcccccttccagcactgtgacgtggtctccaccaccacccacaaaaccttgcggggctgccgagc tggcatgatcttctaccggaaaggtgtccgcagcgtcgaccccaaaacggggaaggaggtcctgtataacctggaaagcc tcatcaatcaggccgtcttccctggtctccaggggggccctcacaatcacgcaattgcaggaattgctgtggctttgaaa caagccatgactcccgaattcaagacctaccagcagcaggtggtggccaactgcaaggctttgtcagctgctctcatcag ctcgggataccacgtcgtcactgggggctccgacaaccacttgatcctcgtcgatctgcgcaaccggggcacggatgggg ggcgagctgaacgggtcctagagctctgcgccatcgcctgcaacaagaatacctgtccaggagacaaaagtgctttgcgt cccagtgggctgagattggggactccggctctcacctcccgaggattcctggaagaagactttaagaaagtcgctcactt cattcacaaaggtatagagctcactttacaggtgcagagcgacatgagccctaaagccaccctgagagaattcaaagaga agctggtgacggagcagaagtaccaagggctgctgaggtccctcaaggaggaggtggagaccttcgctgattccttcccg cttcccggcttgcctgtgttgtaaaggagccacatctggaatggcagcccaccccagctgccctcttgcaatgggaccct cctcctccttcagtgcccctgtctttggtttctcttgggtcgccttctgcttttataatccaatttttagccaattcttt tcctcccctttttaagaagaaaaatgcaccagagctgggaaggaaatggaacaaggacaaatgttagtactaccctctct ggaacggttaatgacagcccagtatttacacacacacacacacgtcttgccagaaaaaaaaacccctattgatggaacag gagaagcatctcttctagagatgctttggagagaaattggccatttagggggaaaaattgttcttcaaactgttttgcat taagttacagaatttattgccacaatttatagggatgacaatggcttaagcaggagtgggccttctgttcaccacacagc ccttccaggaaaccttgtggttggccgtggagggaagcaggaagttaaacaatgcggggatttatttctctcacacacct gagcttgtcccacggattctacttccagtttccaaaaagcagatgtgttgttcaaggaaaggggcacttttaatgacaag ctgagcaacatatttgacaccaactacttcccacttgcggtttatctccccaccacccacagttgccttcactgtactag atgcacaagctcaaagatactgtcaggacagtttttactaagcacaataaaattaagaattttaccacgactg |
Protein
Protein ID | habu1_s2789_g09958.t1 |
---|---|
Definition | - |
>habu1_s2789_g09958.t1 MANTNAGGDHVTKNLWLSHNKMVMEALDTNDPEVYDIIKKEKRRQRLGLELIASENFASRAVLEALGSCLNNKYSEGYPG QRYYGGTEFVDELERLCQKRALEAYGLDPQKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKK ISATSIFFESMPYKVNPETGYIDYDRLEENARLFHPKLIIAGVSCYSRNLDYARMRKIADENSAYLMADMAHISGLVAAG VVPSPFQHCDVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKEVLYNLESLINQAVFPGLQGGPHNHAIAGIAVALKQA MTPEFKTYQQQVVANCKALSAALISSGYHVVTGGSDNHLILVDLRNRGTDGGRAERVLELCAIACNKNTCPGDKSALRPS GLRLGTPALTSRGFLEEDFKKVAHFIHKGIELTLQVQSDMSPKATLREFKEKLVTEQKYQGLLRSLKEEVETFADSFPLP GLPVL |