Gene
| Gene Model ID | habu1_s2789_g09983 |
|---|---|
| Locus | habu1_scaffold2789 : 661644 ... 667248 : - |
| To GenomeBrowser | habu1_scaffold2789:661644..667248 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lipopolysaccharide-induced tumor necrosis factor-alpha factor | GO:0044424 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g09983.t1 | 1 | 1 | zf-LITAF-like | 82 | 153 | 6.6e-26 | 89.9 | 1.2e-29 | 8.6e-26 | 89.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g09983.t1 | gi|701325275|ref|XP_009991264.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Tauraco erythrolophus] | 5.00264e-43 |
| habu1_s2789_g09983.t1 | gi|704278423|ref|XP_010160601.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Caprimulgus carolinensis] | 3.99931e-42 |
| habu1_s2789_g09983.t1 | gi|706146853|ref|XP_010205349.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Colius striatus] | 4.99983e-42 |
| habu1_s2789_g09983.t1 | gi|698449172|ref|XP_009818536.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Gavia stellata] | 8.00001e-42 |
| habu1_s2789_g09983.t1 | gi|699604191|ref|XP_009871147.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Apaloderma vittatum] | 9.99967e-42 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 17.5 |
| Venom grand-1 | 25.4 |
| Pit, infrared sensing | 19.2 |
| Nose | 23.0 |
| Brain-1 | 4.2 |
| Eye | 7.2 |
| fetal fibroblast | 11.9 |
| venom gland-2 | 35.9 |
| Brain-2 | 2.6 |
| Spleen | 56.2 |
| Lung | 37.4 |
| Liver | 21.9 |
| Kidney | 11.5 |
| Pancreas | 148.5 |
| Small intestine | 55.5 |
| Large intestine | 79.2 |
| Stomach | 50.0 |
| heart | 8.0 |
| ovary | 57.5 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s2789_g09983.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09983.t1 gcccgggacggcggcccgccaagcctgccctgcgccctcggcatgggcgggccttggagggcgggtggggcgctggaagc gaagcggaagagcccgacggcgagcaggtgaagcgcgcgccaggcgaccggcagaaacatggctgctccttcctcagctc ttccaccgtcttacgaagaatcaaccagcgccagtaatccagctccgtatccctaccctcctgcagggggaattcctgcg aagggggcaccggccccttgcccagtccaggcccatcctccattcccaccccagtcctatggcatgcaaccccagccggt tccagcggtaccttcagtgcccgtccacaccgtttacatcccgggcccgctgatctttcttgagcaccccatgcagatcc actgtcctgcctgcaaccagatgatcgtgacccggatctcgtaccagcctggagctctggcctggctctcctgtgggggc ctcgccctggtggggtgctggctgggctgctgcctgatccccttctgcgtggatgccatgcaggacgtccagcacttctg cccctgctgcaacgccttcctgggtgtccacaagcgcctctgagcggatctgggccccgatgccgggaagtgcaaggtcc ccttttgtacgcctccgctcaagtcctcctgggccaggccttgtggggcccgtccagtgcctcctcaagactcgcccttt ggaacagtgcagaccacctctggagtctctcccccaaacttcggcctgccgtgacctgcactgctgcctgggggaagagc ggatcccggcttcttgcgaaggagcgaaagaaccacacggaggctgctgctcctgctgcccctcggtgccaggcctcctc tgcagggggagtttgcggcacaacctacgaaggctgaggggaggcaactttcagtatttgacccaagctctgcagggctc tagctggctcccatcttttccatcgtggcccatgcccggtaacagagccgccgaggtgggcagcagaagcgcctgctgtg atgccagagcaggatgtttccccgatctgagggttcccagtttggggagccgtggacccttcagcctcacccctctcccc cagctgtcaacgggggaagagaggccccgtgccttgaaaagcagagcaggtgctgctggtacagggcaccccgtccgagg ctcagctgtgcacttgggtgtttaaggggcttcctgcccccaggaagaagggctttttgtcctgcggattggggtcggaa cgggggccagagtagctggagagggaggtgaatctctagagccctttaaagctgttggctctgcaagtccaactttattc tgatttgcttccgaacttaattctgactttttcagcttttgaaataaaactctcttgaaaaaagaaagag |
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Protein
| Protein ID | habu1_s2789_g09983.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09983.t1 MAAPSSALPPSYEESTSASNPAPYPYPPAGGIPAKGAPAPCPVQAHPPFPPQSYGMQPQPVPAVPSVPVHTVYIPGPLIF LEHPMQIHCPACNQMIVTRISYQPGALAWLSCGGLALVGCWLGCCLIPFCVDAMQDVQHFCPCCNAFLGVHKRL |
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