Gene
| Gene Model ID | habu1_s2789_g09991 |
|---|---|
| Locus | habu1_scaffold2789 : 717539 ... 722568 : + |
| To GenomeBrowser | habu1_scaffold2789:717539..722568 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| h(+) cl(-) exchange transporter partial | GO:0005216 GO:0006820 GO:0016020 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g09991.t1 | 1 | 1 | Pentaxin | 372 | 548 | 2.2e-30 | 105.5 | 1.4e-33 | 3.5e-30 | 104.9 |
| habu1_s2789_g09991.t1 | 1 | 1 | Laminin_G_3 | 419 | 538 | 4.6e-08 | 33.4 | 3.0e-11 | 7.3e-08 | 32.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g09991.t1 | gi|637363220|ref|XP_008120629.1| | PREDICTED: pentraxin-4 [Anolis carolinensis] | 0.0 |
| habu1_s2789_g09991.t1 | gi|591384249|ref|XP_007066579.1| | PREDICTED: pentraxin-4 [Chelonia mydas] | 0.0 |
| habu1_s2789_g09991.t1 | gi|564259344|ref|XP_006268597.1| | PREDICTED: pentraxin-4 [Alligator mississippiensis] | 0.0 |
| habu1_s2789_g09991.t1 | gi|641788601|ref|XP_008176220.1| | PREDICTED: pentraxin-4 [Chrysemys picta bellii] | 0.0 |
| habu1_s2789_g09991.t1 | gi|558197150|ref|XP_006130647.1| | PREDICTED: pentraxin-4 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.0 |
| Venom grand-1 | 2.3 |
| Pit, infrared sensing | 2.5 |
| Nose | 0.5 |
| Brain-1 | 0.8 |
| Eye | 0.8 |
| fetal fibroblast | 0.4 |
| venom gland-2 | 0.6 |
| Brain-2 | 0.7 |
| Spleen | 0.4 |
| Lung | 0.9 |
| Liver | 0.2 |
| Kidney | 0.3 |
| Pancreas | 0.3 |
| Small intestine | 0.4 |
| Large intestine | 0.7 |
| Stomach | 0.7 |
| heart | 2.4 |
| ovary | 0.3 |
| cheek muscle | 17.0 |
Transcript
| Transcript ID | habu1_s2789_g09991.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09991.t1 gctcgtgccagccaggctcgtctctctgggatccgcagcggcttcgggatgcgggcggcggcggggctcgtgcccgtggc cctggtcctggcggccgcctgtctgcggggcgccctgctgcagaccccgggggcagctgagccgcggcgacccttcttcg agaagctccggcgcctggaagcccagagaagccagggacaccaaatgaagggccccgaggctcttggtgctatcatgcct gtgcctgtcctaggaaggagcggatcccgcttttcttgcccccacctgtttccccatgctgttgtcctgggcctcccctc tgccctgggctttgaggggcctgaccggactcctgtttcccagttccgatggtttcaggaggtcaccctgacgcgccttc aggagatggcagagaactacaacctttctcacagtctgcacaccaagatggaccagctgctgcagaagcaggagagcctg gagttggtggccaacgggtcctgggcctccagccaggaggagctgcatcgcttacaggcttgggtagagaagctggaaag gagtggcaagaagcaagcgctgaggatccgagccctggaagaggcctggcaggagacgctgcaacagcagccgaggccac agcaggagagccgcctgtccaacctcacccaggagttcaagagccaccggcaggacttccggcacatggctgtccagcag cggagcctgcagaaggccctggagagcctgcaggatgccctccggagccagggaagcaagctgggcaacatcaagcgaag gctgaagagtcttaagcagaaggaggcgctgcccagtccttggactgcagcccgtcgctttggttcagagaaagcaccag aggcggttggagggcagagccccacctcgaagaagctgggtgccaggcatcgccagcaggggggccacctggaggccctg gccaagagccgagcggcactgcagagaggctcccttctaagccaggaggcttccccgcttcaggtggatccgggtccggc ctcttcacctgagcagcagatcctggaacaactgccccctggcccagccaaagcccctgcagaggagaagcctccaggaa ggcctcggaaaccagggacaaggtgcaacgtggatgccatgctggtcttccccaatgcttccaccgagaacttcgtagcc ttccagcccggcctgcacaccagcttgctggaactgagcctctgcagctgggtgaggaccagcgcccgttacctgggcac catcctgtcgtatgccacagaagagaatgacaacaagctggtgctccatggcagggacgctgccccccgaaactccatcc attttgtgattggcgaccccgctttccgggaactgccagtggggggcatcttggacggcaggtggcaccacatctgcgtc atctggtcctccctccaggggcgctactggttctacctggaccgtcggctggcctccctgggctccagcttccagaaggg ctatgagattccgccccaagggtcgctgatccttggccaggagcaagacacgcttggcggagggttcgaatcctctgaat cattcgtggggctcctggcaggctttgccatgtggggccgagtgctgctgcctggggaggtctccagcattgccctcgga gaagatctgccccacgggacggtgctcaccttggccaacgtctccatgctcagcggttctgtgcggaaggtagactgccc ctgccttgagcactgcctgtgaacacccccccgggaagcccggaggctgcccaccatccccgctctcaccccagaatgag ctcagttggattttctccagagaagggaccctgccgaaggggccagggcagtggtgggattcaaatatgtaaacaaccgg ttctctgtgtggatgctgcttccagaagtccattctgggcctgggcaacaaaaaattagctaccaattctgccgaagtgg tgcgaactggctgaatcccaccactgggccggggtcaacctgaaggcagcagctgaaaccccaaagttgctctaggcctc ccttagaagaagccattcaagccccaaagcaggattggcgcatctgtacagtatttcctaggatggtcttcgtcccacct gtttcggctgggggagcttcccctgctctccctcacctcagcccctttgactccggactccaagactgactggcaccagt agttcataccacccaactgagggatgggtggtgggcctggggcaggatagctggcactctggctcaagtcacccagccag cctcccctgctcaaacagcagcatcgggcgccaggttacaccaactgcacaactgcagaaatatggaaaaataggctcca cgcattgccgatttccaggatatttgtgcaggggacgggaactgctcatcactcatctgtctgatgttccaatttcttcc ttctggcctgggggcaggggtaggaggttggacaattttttttcctcatctgctattttcataattttttaataaaaaaa agatggtgggcatggttgataaaagtacattagtttctcccaagatgagagtttcttcttacatttctgacgccaattgt gattccctgccttgcttagcttgtgtaatgtactggagagaaccaattaatttcatggttgaaaactagggttttgactt ggagcaataaatatttattcaagacctgggaca |
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Protein
| Protein ID | habu1_s2789_g09991.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g09991.t1 MRAAAGLVPVALVLAAACLRGALLQTPGAAEPRRPFFEKLRRLEAQRSQGHQMKGPEALGAIMPVPVLGRSGSRFSCPHL FPHAVVLGLPSALGFEGPDRTPVSQFRWFQEVTLTRLQEMAENYNLSHSLHTKMDQLLQKQESLELVANGSWASSQEELH RLQAWVEKLERSGKKQALRIRALEEAWQETLQQQPRPQQESRLSNLTQEFKSHRQDFRHMAVQQRSLQKALESLQDALRS QGSKLGNIKRRLKSLKQKEALPSPWTAARRFGSEKAPEAVGGQSPTSKKLGARHRQQGGHLEALAKSRAALQRGSLLSQE ASPLQVDPGPASSPEQQILEQLPPGPAKAPAEEKPPGRPRKPGTRCNVDAMLVFPNASTENFVAFQPGLHTSLLELSLCS WVRTSARYLGTILSYATEENDNKLVLHGRDAAPRNSIHFVIGDPAFRELPVGGILDGRWHHICVIWSSLQGRYWFYLDRR LASLGSSFQKGYEIPPQGSLILGQEQDTLGGGFESSESFVGLLAGFAMWGRVLLPGEVSSIALGEDLPHGTVLTLANVSM LSGSVRKVDCPCLEHCL |
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