Gene
| Gene Model ID | habu1_s2789_g10001 |
|---|---|
| Locus | habu1_scaffold2789 : 783361 ... 792188 : - |
| To GenomeBrowser | habu1_scaffold2789:783361..792188 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase mgrn1 | GO:0000209 GO:0008270 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10001.t3 | 1 | 1 | zf-C3HC4_3 | 276 | 322 | 8.9e-15 | 54.1 | 1.1e-17 | 2.0e-14 | 52.9 |
| habu1_s2789_g10001.t3 | 1 | 1 | zf-C3HC4_2 | 279 | 317 | 4.3e-08 | 33.0 | 1.1e-10 | 2.0e-07 | 30.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10001.t3 | gi|530651655|ref|XP_005312200.1| | PREDICTED: E3 ubiquitin-protein ligase MGRN1 isoform X4 [Chrysemys picta bellii] | 0.0 |
| habu1_s2789_g10001.t3 | gi|530651649|ref|XP_005312197.1| | PREDICTED: E3 ubiquitin-protein ligase MGRN1 isoform X2 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 26.3 |
| Venom grand-1 | 41.3 |
| Pit, infrared sensing | 27.5 |
| Nose | 25.1 |
| Brain-1 | 31.0 |
| Eye | 32.6 |
| fetal fibroblast | 36.6 |
| venom gland-2 | 29.3 |
| Brain-2 | 31.8 |
| Spleen | 23.9 |
| Lung | 49.2 |
| Liver | 66.2 |
| Kidney | 36.7 |
| Pancreas | 28.4 |
| Small intestine | 41.9 |
| Large intestine | 34.3 |
| Stomach | 30.1 |
| heart | 35.2 |
| ovary | 53.5 |
| cheek muscle | 50.7 |
Transcript
| Transcript ID | habu1_s2789_g10001.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10001.t1 gggcgggcggggagtgatgactcgctttcccgtggtgctttgcgcggcagcggcctgcaggcctgcctgacgggcgacac agcggggcgaccgccgccagctcctgccctgccatgggctccctgctcagccgccgcatcgccggcgtggaggacatcga catccaggccaactcggcctaccgctacccgcccaagtccggcaactactttgctagccacttcttcatgggcggcgaga agttcgacatgccacatcccgagggctacctttttggggagaacatggacctcaactttctgggcaaccggcccgtccag tttccctatgtgaccccagcccctcatgagccagtaaagacccttcggagcctggtgaacatccgtaaagactccctgcg tctggtcaggtacaaagaagatgttgacagccccacagaggagaacgggaagcagaaggctttatacagtcttgaattca cctttgatgcagatgcccgggtggccattaccatctactgtcaagcaacagaggagctgattggtggcatggctgtctac agcacaaagaatccttctctgcaatcggagacggtgcactacaagcggggagtgagccagcagttctccctgccgtcctt caagatcgacttctccgactggaaggatgaagagctgaactttgatcttgaccggggcatttttccagtggtcatccaag ccacggtagacgaaggcgatgttgttgtggaagtgactggccatgcccacatcctcttggctgccttcgagaagcacgtt gatggcagcttctctgtaaagcccttgaaacagaagcagattgtggaccgggtgagttacctgctgcaggagatctacgg cattgagaacaagaataaccaagagacgaagccctgcgatgatgagaacagcgacaacagcaacgagtgtgtggtgtgtc tctcagacctgcgggacactctcatcctgccctgcaggcacctttgtctgtgcaactcctgcgccgacaccctgcgctac caggccaacaactgtcccatctgccgtttgcccttccgtgcgctgctgcagatccgggcagtgaggaagaagccgggtgc cttgtcgccactctccttcagccccgtcttggcccagactctggatcgggaggagcagtcgtgctcggacaacatccccc cagggtacgagcccatttccctgctggaagccctgaacggcctgcgctccgtctcaccctccatcccctcggctcccctc tatgacgagatcagctactctggggtgctggacggcctccctccctccagcaggcccctggtggggctcgaccgaggagg cctggagagcagccactcaaagagcaagcgcagcaagtctccggacagtgctctccggtccccctcctcaccaatccatg aagaggacgaggagaagttctcggaagagctggccctggagccgcctgttgttgggacggggcacatcctgtgtgaagaa gacagctcccctgagagcctggcagctgaagaagccacggtggttgccgccctgccacaaggtagccaggagcttgtcca ggagagtagcaaatcttgtgaggccaaggtcctccggaaaatggaaagtgagctgcctgctgatgtctacctgccagccc ttggcccggatgcctgctctgttgggatagaagagtaagccgggtcttctgacttcaccggtgccctcccaaaccgtggg agcagcaattccgggcagcccttccttttccttcagcctcacctctgtgttgaaagtgggccgaacctgtcctaagtacc tggccgaagaatcaaactccaagcaccgagaccgcccacctgcaagaagccagcccccctttcccctccctcctgcccag aagggacacagcttcagacacagcaagatggacacatttgtcttctttgggccggtctcaggccagcaccctctcttttc tggatatgtgtctctgtatagacatgcatgacccctttgtagtcgtgatgggaaagaccccttcctggtctgctgccatg gactgttctctccccagtggggacccttttcaagcctctgctctcttgcttaaccattcttggatgcagtcagccacttg gggcctctgcaagagcagctggggtgaagtggctccccacatccaggcctgcgagttacagggctgttcttcccatctcc ccgccaggtgcagcatccaccacctgctgattgtagccacggttctgggactttctccccctccaggccggccctcatga cttgtgcaggaggtcccttactctgctgccagccactctcccctgccctccccacctcccggcgagtctcttctagtgcc tgtcttctttccacacctagaaggtgtgttcctatatttatagtaataaaccttttggtgtcactttctggt |
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| Transcript ID | habu1_s2789_g10001.t2 |
| Definition | - |
>habu1_s2789_g10001.t2 gggcgggcggggagtgatgactcgctttcccgtggtgctttgcgcggcagcggcctgcaggcctgcctgacgggcgacac agcggggcgaccgccgccagctcctgccctgccatgggctccctgctcagccgccgcatcgccggcgtggaggacatcga catccaggccaactcggcctaccgctacccgcccaagtccggcaactactttgctagccacttcttcatgggcggcgaga agttcgacatgccacatcccgagggctacctttttggggagaacatggacctcaactttctgggcaaccggcccgtccag tttccctatgtgaccccagcccctcatgagccagtaaagacccttcggagcctggtgaacatccgtaaagactccctgcg tctggtcaggtacaaagaagatgttgacagccccacagaggagaacgggaagcagaaggctttatacagtcttgaattca cctttgatgcagatgcccgggtggccattaccatctactgtcaagcaacagaggagctgattggtggcatggctgtctac agcacaaagaatccttctctgcaatcggagacggtgcactacaagcggggagtgagccagcagttctccctgccgtcctt caagatcgacttctccgactggaaggatgaagagctgaactttgatcttgaccggggcatttttccagtggtcatccaag ccacggtagacgaaggcgatgttgttgtggaagtgactggccatgcccacatcctcttggctgccttcgagaagcacgtt gatggcagcttctctgtaaagcccttgaaacagaagcagattgtggaccgggtgagttacctgctgcaggagatctacgg cattgagaacaagaataaccaagagacgaagccctgcgatgatgagaacagcgacaacagcaacgagtgtgtggtgtgtc tctcagacctgcgggacactctcatcctgccctgcaggcacctttgtctgtgcaactcctgcgccgacaccctgcgctac caggccaacaactgtcccatctgccgtttgcccttccgtgcgctgctgcagatccgggcagtgaggaagaagccgggtgc cttgtcgccactctccttcagccccgtcttggcccagactctggatcgggaggagcagtcgtgctcggacaacatccccc cagggtacgagcccatttccctgctggaagccctgaacggcctgcgctccgtctcaccctccatcccctcggctcccctc tatgacgagatcagctactctggggtgctggacggcctccctccctccagcaggcccctggtggggctcgaccgaggagg cctggagagcagccactcaaagagcaagcgcagcaagtctccggacagtgctctccggtccccctcctcaccaatccatg aagaggacgaggagaagttctcggaagagctggccctggagccgcctgttgttgggacggggcacatcctgtgtgaagaa gacagctcccctgagagcctggcagctgaagaagccacggtggttgccgccctgccacaaggtagccaggagcttgtcca ggagagtagcaaatcttgtgaggccaaggtcctccggaaaatggaaagtgagctgcctgctgatgtctacctgccagggt cttctgacttcaccggtgccctcccaaaccgtgggagcagcaattccgggcagcccttccttttccttcagcctcacctc tgtgttgaaagtgggccgaacctgtcctaagtacctggccgaagaatcaaactccaagcaccgagaccgcccacctgcaa gaagccagcccccctttcccctccctcctgcccagaagggacacagcttcagacacagcaagatggacacatttgtcttc tttgggccggtctcaggccagcaccctctcttttctggatatgtgtctctgtatagacatgcatgacccctttgtagtcg tgatgggaaagaccccttcctggtctgctgccatggactgttctctccccagtggggacccttttcaagcctctgctctc ttgcttaaccattcttggatgcagtcagccacttggggcctctgcaagagcagctggggtgaagtggctccccacatcca ggcctgcgagttacagggctgttcttcccatctccccgccaggtgcagcatccaccacctgctgattgtagccacggttc tgggactttctccccctccaggccggccctcatgacttgtgcaggaggtcccttactctgctgccagccactctcccctg ccctccccacctcccggcgagtctcttctagtgcctgtcttctttccacacctagaaggtgtgttcctatatttatagta ataaaccttttggtgtcactttctggt |
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| Transcript ID | habu1_s2789_g10001.t3 |
| Definition | - |
>habu1_s2789_g10001.t3 gggcgggcggggagtgatgactcgctttcccgtggtgctttgcgcggcagcggcctgcaggcctgcctgacgggcgacac agcggggcgaccgccgccagctcctgccctgccatgggctccctgctcagccgccgcatcgccggcgtggaggacatcga catccaggccaactcggcctaccgctacccgcccaagtccggcaactactttgctagccacttcttcatgggcggcgaga agttcgacatgccacatcccgagggctacctttttggggagaacatggacctcaactttctgggcaaccggcccgtccag tttccctatgtgaccccagcccctcatgagccagtaaagacccttcggagcctggtgaacatccgtaaagactccctgcg tctggtcaggtacaaagaagatgttgacagccccacagaggagaacgggaagcagaaggctttatacagtcttgaattca cctttgatgcagatgcccgggtggccattaccatctactgtcaagcaacagaggagctgattggtggcatggctgtctac agcacaaagaatccttctctgcaatcggagacggtgcactacaagcggggagtgagccagcagttctccctgccgtcctt caagatcgacttctccgactggaaggatgaagagctgaactttgatcttgaccggggcatttttccagtggtcatccaag ccacggtagacgaaggcgatgttgttgtggaagtgactggccatgcccacatcctcttggctgccttcgagaagcacgtt gatggcagcttctctgtaaagcccttgaaacagaagcagattgtggaccgggtgagttacctgctgcaggagatctacgg cattgagaacaagaataaccaagagacgaagccctgcgatgatgagaacagcgacaacagcaacgagtgtgtggtgtgtc tctcagacctgcgggacactctcatcctgccctgcaggcacctttgtctgtgcaactcctgcgccgacaccctgcgctac caggccaacaactgtcccatctgccgtttgcccttccgtgcgctgctgcagatccgggcagtgaggaagaagccgggtgc cttgtcgccactctccttcagccccgtcttggcccagactctggatcgggaggagcagtcgtgctcggacaacatccccc cagggtacgagcccatttccctgctggaagccctgaacggcctgcgctccgtctcaccctccatcccctcggctcccctc tatgacgagatcagctactctggggtgctggacggcctccctccctccagcaggcccctggtggggctcgaccgaggagg cctggagagcagccactcaaagagcaagcgcagcaagtctccggacagtgctctccggtccccctcctcaccaatccatg aagaggacgaggagaagttctcggaagagctggccctggagccgcctgttgttgggacggggcacatcctgtgtgaagaa gacagctcccctgagagcctggcagctgaagaagccacggtggttgccgccctgccacaaggtagccaggagcttgtcca ggagagtagcaaatcttgtgaggccaaggtcctccggaaaatggaaagtgagctgcctgctgatgtctacctgccagaag agtaagccgggtcttctgacttcaccggtgccctcccaaaccgtgggagcagcaattccgggcagcccttccttttcctt cagcctcacctctgtgttgaaagtgggccgaacctgtcctaagtacctggccgaagaatcaaactccaagcaccgagacc gcccacctgcaagaagccagcccccctttcccctccctcctgcccagaagggacacagcttcagacacagcaagatggac acatttgtcttctttgggccggtctcaggccagcaccctctcttttctggatatgtgtctctgtatagacatgcatgacc cctttgtagtcgtgatgggaaagaccccttcctggtctgctgccatggactgttctctccccagtggggacccttttcaa gcctctgctctcttgcttaaccattcttggatgcagtcagccacttggggcctctgcaagagcagctggggtgaagtggc tccccacatccaggcctgcgagttacagggctgttcttcccatctccccgccaggtgcagcatccaccacctgctgattg tagccacggttctgggactttctccccctccaggccggccctcatgacttgtgcaggaggtcccttactctgctgccagc cactctcccctgccctccccacctcccggcgagtctcttctagtgcctgtcttctttccacacctagaaggtgtgttcct atatttatagtaataaaccttttggtgtcactttctggt |
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Protein
| Protein ID | habu1_s2789_g10001.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10001.t1 MGSLLSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDMPHPEGYLFGENMDLNFLGNRPVQFPYVTPAPHEP VKTLRSLVNIRKDSLRLVRYKEDVDSPTEENGKQKALYSLEFTFDADARVAITIYCQATEELIGGMAVYSTKNPSLQSET VHYKRGVSQQFSLPSFKIDFSDWKDEELNFDLDRGIFPVVIQATVDEGDVVVEVTGHAHILLAAFEKHVDGSFSVKPLKQ KQIVDRVSYLLQEIYGIENKNNQETKPCDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSCADTLRYQANNCPICRLP FRALLQIRAVRKKPGALSPLSFSPVLAQTLDREEQSCSDNIPPGYEPISLLEALNGLRSVSPSIPSAPLYDEISYSGVLD GLPPSSRPLVGLDRGGLESSHSKSKRSKSPDSALRSPSSPIHEEDEEKFSEELALEPPVVGTGHILCEEDSSPESLAAEE ATVVAALPQGSQELVQESSKSCEAKVLRKMESELPADVYLPALGPDACSVGIEE |
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| Protein ID | habu1_s2789_g10001.t2 |
| Definition | - |
>habu1_s2789_g10001.t2 MGSLLSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDMPHPEGYLFGENMDLNFLGNRPVQFPYVTPAPHEP VKTLRSLVNIRKDSLRLVRYKEDVDSPTEENGKQKALYSLEFTFDADARVAITIYCQATEELIGGMAVYSTKNPSLQSET VHYKRGVSQQFSLPSFKIDFSDWKDEELNFDLDRGIFPVVIQATVDEGDVVVEVTGHAHILLAAFEKHVDGSFSVKPLKQ KQIVDRVSYLLQEIYGIENKNNQETKPCDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSCADTLRYQANNCPICRLP FRALLQIRAVRKKPGALSPLSFSPVLAQTLDREEQSCSDNIPPGYEPISLLEALNGLRSVSPSIPSAPLYDEISYSGVLD GLPPSSRPLVGLDRGGLESSHSKSKRSKSPDSALRSPSSPIHEEDEEKFSEELALEPPVVGTGHILCEEDSSPESLAAEE ATVVAALPQGSQELVQESSKSCEAKVLRKMESELPADVYLPGSSDFTGALPNRGSSNSGQPFLFLQPHLCVESGPNLS |
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| Protein ID | habu1_s2789_g10001.t3 |
| Definition | - |
>habu1_s2789_g10001.t3 MGSLLSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDMPHPEGYLFGENMDLNFLGNRPVQFPYVTPAPHEP VKTLRSLVNIRKDSLRLVRYKEDVDSPTEENGKQKALYSLEFTFDADARVAITIYCQATEELIGGMAVYSTKNPSLQSET VHYKRGVSQQFSLPSFKIDFSDWKDEELNFDLDRGIFPVVIQATVDEGDVVVEVTGHAHILLAAFEKHVDGSFSVKPLKQ KQIVDRVSYLLQEIYGIENKNNQETKPCDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSCADTLRYQANNCPICRLP FRALLQIRAVRKKPGALSPLSFSPVLAQTLDREEQSCSDNIPPGYEPISLLEALNGLRSVSPSIPSAPLYDEISYSGVLD GLPPSSRPLVGLDRGGLESSHSKSKRSKSPDSALRSPSSPIHEEDEEKFSEELALEPPVVGTGHILCEEDSSPESLAAEE ATVVAALPQGSQELVQESSKSCEAKVLRKMESELPADVYLPEE |
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