Gene
| Gene Model ID | habu1_s2789_g10013 |
|---|---|
| Locus | habu1_scaffold2789 : 865289 ... 869859 : + |
| To GenomeBrowser | habu1_scaffold2789:865289..869859 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor ap-4 | GO:0046983 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10013.t1 | 1 | 1 | HLH | 88 | 139 | 8.9e-18 | 63.7 | 9.7e-21 | 4.8e-17 | 61.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10013.t1 | gi|602656362|ref|XP_007433916.1| | PREDICTED: transcription factor AP-4, partial [Python bivittatus] | 0.0 |
| habu1_s2789_g10013.t1 | gi|557327346|ref|XP_006036634.1| | PREDICTED: transcription factor AP-4 [Alligator sinensis] | 0.0 |
| habu1_s2789_g10013.t1 | gi|564235778|ref|XP_006274804.1| | PREDICTED: transcription factor AP-4 [Alligator mississippiensis] | 0.0 |
| habu1_s2789_g10013.t1 | gi|591359144|ref|XP_007054553.1| | PREDICTED: transcription factor AP-4 [Chelonia mydas] | 0.0 |
| habu1_s2789_g10013.t1 | gi|530638857|ref|XP_005306229.1| | PREDICTED: transcription factor AP-4 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.1 |
| Venom grand-1 | 10.6 |
| Pit, infrared sensing | 7.2 |
| Nose | 4.7 |
| Brain-1 | 2.3 |
| Eye | 3.8 |
| fetal fibroblast | 9.9 |
| venom gland-2 | 9.3 |
| Brain-2 | 2.2 |
| Spleen | 4.7 |
| Lung | 3.6 |
| Liver | 4.5 |
| Kidney | 3.0 |
| Pancreas | 10.9 |
| Small intestine | 6.1 |
| Large intestine | 3.2 |
| Stomach | 3.7 |
| heart | 2.2 |
| ovary | 35.1 |
| cheek muscle | 3.7 |
Transcript
| Transcript ID | habu1_s2789_g10013.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10013.t1 cgcccggcggtgcgggaagagcgggctcggcggcgcggccccctcggcgtgcccgccccccgccagctgggctggaaggc ggcctccgtgtggggcgctgcacggggccggggcaggccacgggcgcctcttcgggccgctccgaggggcccccgatgcg agccgtcccgggcaacggctcttccccgcttctgctcgccgccccatccccgccggcatacgaggcggccttttcccgtg agggccccgccgtggtcgctggcttttccgcgcggaagcgcgcggtgggtgtcccgtggtccgtggctggccccgagcgc aggcatgcccgacgcatcacacgaccaagtgaccggaccatctttcccgttgtgcaaaaatccactgagacgcagaggga ccaggagcgacggatacgcagggagatcgctaacagcaacgagcgacggcgtatgcagagtatcaatgcggggtttcagt ccctgaaaactctcatcccacacacggacggggagaagctcagcaaggcagcgatccttcagcagacggcggagtacata ttttctctggagcaggagaagacgcggctgctgcagcagaacgctcagctcaagcgcttcatccaggagttcagtggatc ctccccaaagcggcggcgagcagaggacaaggatgaaggcattgggtcgccagacatctgggaggacgagaaggccgagg acctgcgccgggagatgatcgagctccggcagcagctggacaaggaacgctcggtccgaatgatgctggaagagcaggta cgctctttggaggcccacttgtacccggagaagctgaaggtgattgcccaacaggtgcagctccagcagcaggaacagct cctgcctgcgcatggccccccggcacccacccagcacccaacagtgattgttcctgcaccacctacgccttcgcaccatg tcaccgtggtaaccatgggcccctcctcagtgatcaacactatctctacgtccaggcagaacctggacacgatcgttcag gcgatccagcacatcgaggggactcgggaaaagcagctgctggaggaggaagagcagcgccggggtgcagtcattgtgac ccctgcccggaacagcctggacccctcgaactcggacacggcctctgacctggaggcggaagacgacgacgattccatgg aacacagcaaggccgggatgccctgacctctgcctggcagcgggagggcgagcagggtgggggcgaggggacttcaggaa atatgctgaaatttttacaaaataccacaacatttgggtctattttgtgaccttccaatactgtaagtgggagcattagg atggggatgagctggaaatcgggctgtccagtttgaagcagctgaggcggggggttggcaagctgcaagcagtcaggctc tcccggcacatggcttggcagtccacggctcctggctcaaaggatggatttcctctggcgcctccagctgtggggtcttg cccctcttcggccttgctcctggccctcggaggggcgaagggactcctgcggccctctaaaagctccagggagaaggttg gtgtcggtaggcctcagggttgtctctgcctcactggccctcctcgcacaccttttggtcccctccattcttgggagctg gttcaggcttggggccttttcagagtctgggagagagcattgacccccggcctctcctctggggggtttcgttcttggaa gcacttaaatccgttccatggtttgactgggtccgcgaagagcggttctgctccgtgacggttgctgtcgttgnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccc cagccacagctgttcctttgttctttcatattttttatatgggttgttttttgttctttttttttttacaagtttcaggt ctttgtgttcattgagatgctattatattttgttaagaaagtggaaaaatgaggcttgtgcctttgtaaagaaacaaaat aaagtttgtactttgttttttatat |
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Protein
| Protein ID | habu1_s2789_g10013.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10013.t1 MRAVPGNGSSPLLLAAPSPPAYEAAFSREGPAVVAGFSARKRAVGVPWSVAGPERRHARRITRPSDRTIFPVVQKSTETQ RDQERRIRREIANSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNAQLKRFIQEFS GSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHLYPEKLKVIAQQVQLQQQE QLLPAHGPPAPTQHPTVIVPAPPTPSHHVTVVTMGPSSVINTISTSRQNLDTIVQAIQHIEGTREKQLLEEEEQRRGAVI VTPARNSLDPSNSDTASDLEAEDDDDSMEHSKAGMP |
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