Gene
Gene Model ID | habu1_s2789_g10022 |
---|---|
Locus | habu1_scaffold2789 : 945082 ... 945648 : - |
To GenomeBrowser | habu1_scaffold2789:945082..945648 |
Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
Annotation | GO |
---|---|
dna-directed rna polymerase iii subunit rpc10 | EC:2.7.7.6 GO:0003677 GO:0003899 GO:0005730 GO:0006144 GO:0006206 GO:0006351 GO:0008270 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s2789_g10022.t1 | 1 | 1 | RNA_POL_M_15KD | 4 | 31 | 8.5e-07 | 28.5 | 8.6e-10 | 8.5e-07 | 28.5 |
habu1_s2789_g10022.t1 | 1 | 1 | TFIIS_C | 68 | 107 | 9.0e-22 | 76.4 | 9.1e-25 | 9.0e-22 | 76.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s2789_g10022.t1 | gi|530638785|ref|XP_005306194.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Chrysemys picta bellii] | 0.0 |
habu1_s2789_g10022.t1 | gi|564229474|ref|XP_006259179.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Alligator mississippiensis] | 0.0 |
habu1_s2789_g10022.t1 | gi|637367767|ref|XP_003229300.2| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Anolis carolinensis] | 0.0 |
habu1_s2789_g10022.t1 | gi|525013128|ref|XP_005054164.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Ficedula albicollis] | 0.0 |
habu1_s2789_g10022.t1 | gi|542167116|ref|XP_005492147.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Zonotrichia albicollis] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 11.7 |
Venom grand-1 | 42.2 |
Pit, infrared sensing | 13.4 |
Nose | 21.6 |
Brain-1 | 5.0 |
Eye | 10.9 |
fetal fibroblast | 15.8 |
venom gland-2 | 12.2 |
Brain-2 | 5.9 |
Spleen | 23.2 |
Lung | 14.2 |
Liver | 35.6 |
Kidney | 20.8 |
Pancreas | 69.0 |
Small intestine | 12.2 |
Large intestine | 11.5 |
Stomach | 24.0 |
heart | 12.0 |
ovary | 19.4 |
cheek muscle | 9.9 |
Transcript
Transcript ID | habu1_s2789_g10022.t1 |
---|---|
Definition | - |
>habu1_s2789_g10022.t1 cgggcaggcggacgtccgaggcacgccgagatgctgctcttctgcccggcctgcgggaacgtgctggtagccgaggaggg cgcccgctgccaccgcttcgcttgcaccacctgcccctacgtgcggaacgtcacgcgcaaggtgacgagccggcgctacc cgaagctgaaggaagtggacgacgtgctgggcggggccgccgcctgggagaacgtggactcgaccgcagagccctgcccc aagtgcggccacccgcgcgcctacttcatgcagctgcagacgcgctcggccgacgagcccatgaccaccttctacaagtg ctgcagcgcccggtgcggccaccgctggcgggactgagcggcctggggaaggcgcccgcgcgatgcttccccagcggagg aaggg |
Protein
Protein ID | habu1_s2789_g10022.t1 |
---|---|
Definition | - |
>habu1_s2789_g10022.t1 MLLFCPACGNVLVAEEGARCHRFACTTCPYVRNVTRKVTSRRYPKLKEVDDVLGGAAAWENVDSTAEPCPKCGHPRAYFM QLQTRSADEPMTTFYKCCSARCGHRWRD |