Gene
| Gene Model ID | habu1_s2789_g10022 |
|---|---|
| Locus | habu1_scaffold2789 : 945082 ... 945648 : - |
| To GenomeBrowser | habu1_scaffold2789:945082..945648 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc10 | EC:2.7.7.6 GO:0003677 GO:0003899 GO:0005730 GO:0006144 GO:0006206 GO:0006351 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10022.t1 | 1 | 1 | RNA_POL_M_15KD | 4 | 31 | 8.5e-07 | 28.5 | 8.6e-10 | 8.5e-07 | 28.5 |
| habu1_s2789_g10022.t1 | 1 | 1 | TFIIS_C | 68 | 107 | 9.0e-22 | 76.4 | 9.1e-25 | 9.0e-22 | 76.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10022.t1 | gi|530638785|ref|XP_005306194.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Chrysemys picta bellii] | 0.0 |
| habu1_s2789_g10022.t1 | gi|564229474|ref|XP_006259179.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Alligator mississippiensis] | 0.0 |
| habu1_s2789_g10022.t1 | gi|637367767|ref|XP_003229300.2| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Anolis carolinensis] | 0.0 |
| habu1_s2789_g10022.t1 | gi|525013128|ref|XP_005054164.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Ficedula albicollis] | 0.0 |
| habu1_s2789_g10022.t1 | gi|542167116|ref|XP_005492147.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Zonotrichia albicollis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 11.7 |
| Venom grand-1 | 42.2 |
| Pit, infrared sensing | 13.4 |
| Nose | 21.6 |
| Brain-1 | 5.0 |
| Eye | 10.9 |
| fetal fibroblast | 15.8 |
| venom gland-2 | 12.2 |
| Brain-2 | 5.9 |
| Spleen | 23.2 |
| Lung | 14.2 |
| Liver | 35.6 |
| Kidney | 20.8 |
| Pancreas | 69.0 |
| Small intestine | 12.2 |
| Large intestine | 11.5 |
| Stomach | 24.0 |
| heart | 12.0 |
| ovary | 19.4 |
| cheek muscle | 9.9 |
Transcript
| Transcript ID | habu1_s2789_g10022.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10022.t1 cgggcaggcggacgtccgaggcacgccgagatgctgctcttctgcccggcctgcgggaacgtgctggtagccgaggaggg cgcccgctgccaccgcttcgcttgcaccacctgcccctacgtgcggaacgtcacgcgcaaggtgacgagccggcgctacc cgaagctgaaggaagtggacgacgtgctgggcggggccgccgcctgggagaacgtggactcgaccgcagagccctgcccc aagtgcggccacccgcgcgcctacttcatgcagctgcagacgcgctcggccgacgagcccatgaccaccttctacaagtg ctgcagcgcccggtgcggccaccgctggcgggactgagcggcctggggaaggcgcccgcgcgatgcttccccagcggagg aaggg |
|
Protein
| Protein ID | habu1_s2789_g10022.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10022.t1 MLLFCPACGNVLVAEEGARCHRFACTTCPYVRNVTRKVTSRRYPKLKEVDDVLGGAAAWENVDSTAEPCPKCGHPRAYFM QLQTRSADEPMTTFYKCCSARCGHRWRD |
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