Gene
| Gene Model ID | habu1_s2789_g10028 |
|---|---|
| Locus | habu1_scaffold2789 : 982334 ... 985867 : - |
| To GenomeBrowser | habu1_scaffold2789:982334..985867 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytoglobin- partial | GO:0005344 GO:0005506 GO:0015671 GO:0019825 GO:0020037 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10028.t2 | 1 | 1 | Globin | 60 | 159 | 1.0e-14 | 54.8 | 8.8e-19 | 1.3e-14 | 54.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10028.t2 | gi|637377601|ref|XP_008123202.1| | PREDICTED: hemoglobin subunit alpha-1-like [Anolis carolinensis] | 1.4013e-45 |
| habu1_s2789_g10028.t2 | gi|602656393|ref|XP_007433931.1| | PREDICTED: myoglobin-like [Python bivittatus] | 1.99993e-41 |
| habu1_s2789_g10028.t2 | gi|558169265|ref|XP_006124665.1| | PREDICTED: cytoglobin-like [Pelodiscus sinensis] | 9.0e-39 |
| habu1_s2789_g10028.t2 | gi|641794337|ref|XP_005306251.2| | PREDICTED: cytoglobin-1-like [Chrysemys picta bellii] | 2.0e-38 |
| habu1_s2789_g10028.t2 | gi|591350284|ref|XP_007069679.1| | PREDICTED: cytoglobin-1-like [Chelonia mydas] | 4.0e-38 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.5 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 0.7 |
| Nose | 0.4 |
| Brain-1 | 0.7 |
| Eye | 1.5 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 0.3 |
| Brain-2 | 0.3 |
| Spleen | 0.4 |
| Lung | 0.1 |
| Liver | 1.0 |
| Kidney | 0.6 |
| Pancreas | 0.0 |
| Small intestine | 2.2 |
| Large intestine | 1.4 |
| Stomach | 0.8 |
| heart | 0.8 |
| ovary | 0.0 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s2789_g10028.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10028.t1 gcgtgattcctcccggccagcgccgcccccctaaccgcccaggaatgcggccgctggaagattccgggaactcgtccccg ctctcccgcccgtccccctccccaccccatcccaacgggcgctcccctgtgccagccatggccgtctttgggggtcccag cggaaagctaaaggtgggaccacccacctcagatccattgaaggatctgacagaagtggaacagcaactgattcgagaca tttggggaaaggtgtttgacaatgctgaagaaaatggcaggattgttattatcagacaggcctgatccagactaccagca gaggaacctccagcccacgtaacagtctggccgttacctcttctttgagcactacagttcatccctgaccgagacctgca ttaggccagtgagccactaccctccactctttcagatgccaatgtctggattcctttgcttgacatgggttcttcacaga atacccagagagtaagcagtatttcaagaacattccaactgaaggtgacctgatgatgatcccagaggtgggcttccatg gccggaggatcatggtgaccctgaaccagctgattgaaagcatgagtcactggaagcaagcctgcaagctcattgagcgg ttggtggaaagccacaagaacgtacacaaggtcccattaggcatgttccagatctcctcaaagaagagtttactaatgac gctcagttagcctgggaaaagttcttcctgattcttcgtgaagaaattgaagctgcttatgcacaagaatagaagccttg aacaaaccctggctgacattaagcaattcgggagcaggccttcacctcattgtgctcatattgtaggaaataaaataaag aaataaatgaaataaaatataaatggaacaaaatgaaa |
|
| Transcript ID | habu1_s2789_g10028.t2 |
| Definition | - |
>habu1_s2789_g10028.t2 gcgtgattcctcccggccagcgccgcccccctaaccgcccaggaatgcggccgctggaagattccgggaactcgtccccg ctctcccgcccgtccccctccccaccccatcccaacgggcgctcccctgtgccagccatggccgtctttgggggtcccag cggaaagctaaaggtgggaccacccacctcagatccattgaaggatctgacagaagtggaacagcaactgattcgagaca tttggggaaaggtgtttgacaatgctgaagaaaatggcaggattgttattatcaggttcttcacagaatacccagagagt aagcagtatttcaagaacattccaactgaaggtgacctgatgatgatcccagaggtgggcttccatggccggaggatcat ggtgaccctgaaccagctgattgaaagcatgagtcactggaagcaagcctgcaagctcattgagcggttggtggaaagcc acaagaacgtacacaaggtcccattaggcatgttccagatctcctcaaagaagagtttactaatgacgctcagttagcct gggaaaagttcttcctgattcttcgtgaagaaattgaagctgcttatgcacaagaatagaagccttgaacaaaccctggc tgacattaagcaattcgggagcaggccttcacctcattgtgctcatattgtaggaaataaaataaagaaataaatgaaat aaaatataaatggaacaaaatgaaa |
|
Protein
| Protein ID | habu1_s2789_g10028.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10028.t1 MRPLEDSGNSSPLSRPSPSPPHPNGRSPVPAMAVFGGPSGKLKVGPPTSDPLKDLTEVEQQLIRDIWGKVFDNAEENGRI VIIRQA |
|
| Protein ID | habu1_s2789_g10028.t2 |
| Definition | - |
>habu1_s2789_g10028.t2 MRPLEDSGNSSPLSRPSPSPPHPNGRSPVPAMAVFGGPSGKLKVGPPTSDPLKDLTEVEQQLIRDIWGKVFDNAEENGRI VIIRFFTEYPESKQYFKNIPTEGDLMMIPEVGFHGRRIMVTLNQLIESMSHWKQACKLIERLVESHKNVHKVPLGMFQIS SKKSLLMTLS |
|