Gene
| Gene Model ID | habu1_s2789_g10030 |
|---|---|
| Locus | habu1_scaffold2789 : 993288 ... 995212 : + |
| To GenomeBrowser | habu1_scaffold2789:993288..995212 |
| Genes list of scaffold | habu1_scaffold2789 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0005737 GO:0043229 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10030.t1 | 1 | 1 | Ribosomal_L28 | 83 | 140 | 2.6e-06 | 27.1 | 2.8e-10 | 4.1e-06 | 26.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10030.t1 | gi|564245572|ref|XP_006261907.1| | PREDICTED: 39S ribosomal protein L28, mitochondrial [Alligator mississippiensis] | 0.0 |
| habu1_s2789_g10030.t1 | gi|591384257|ref|XP_007066583.1| | PREDICTED: 39S ribosomal protein L28, mitochondrial [Chelonia mydas] | 0.0 |
| habu1_s2789_g10030.t1 | gi|327291037|ref|XP_003230228.1| | PREDICTED: 39S ribosomal protein L28, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s2789_g10030.t1 | gi|197128496|gb|ACH44994.1| | putative mitochondrial ribosomal protein L28 variant 1 [Taeniopygia guttata] | 0.0 |
| habu1_s2789_g10030.t1 | gi|530638834|ref|XP_005306218.1| | PREDICTED: 39S ribosomal protein L28, mitochondrial isoform X2 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 26.4 |
| Venom grand-1 | 59.6 |
| Pit, infrared sensing | 28.2 |
| Nose | 32.2 |
| Brain-1 | 18.4 |
| Eye | 33.2 |
| fetal fibroblast | 61.6 |
| venom gland-2 | 138.6 |
| Brain-2 | 21.3 |
| Spleen | 26.7 |
| Lung | 17.4 |
| Liver | 36.1 |
| Kidney | 30.1 |
| Pancreas | 57.0 |
| Small intestine | 26.6 |
| Large intestine | 25.4 |
| Stomach | 28.2 |
| heart | 41.6 |
| ovary | 64.9 |
| cheek muscle | 84.1 |
Transcript
| Transcript ID | habu1_s2789_g10030.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10030.t1 aagcggcgggcggccgaggcagccgcttccggcgtagatctgcgcgcgatgccgctgcataaggtgccgccgcggctgtg ggactcgctgcgcctgcagcgcggcatcctcgcccggctgccgccccactacctgcgggccttgcgcgaggacgccgccg cgccgccccctgccgtccactggaggccgcccgccggcgagtacgtgcgccgcccggggcccctggagggcgtgcggcag caggtggtgccggtgcccgtctacttccctcccgagagccaggaggggctgtggggcggtgagggctgggtggagggcta ccgctacgcccacgacgacaagctctcgagacggttgaagaaggtctggaagccgcagattttcaatcgcgaattctaca gcgagatcctagacaagaagttgagaattgctattaccatgaggacgctggagcagatcgacaaagcttttggctttgac ttctacatcttaaagaccccgaagtctgagttgtgttccaaattgggcatggatctgaagcgcaccttgcttttgagact ggcacgcaaggacccttctctccacccagatgatccatccaagaggaagactgtttataacaaatacaaggagtttgtca ttccagaagaagaggctgaatggattggactgagtttggaggaagctgtggagaagcagagagttctggagaagaaggac cctgttcccctgtttagagtttatgcagaagaacttatcctacacctccaaaaacagcagaaggcttaacaaggaaaagt taacttggcctttgagaatgttctgctctctttggtttcttttatgcatgtcaaatacagcaggactgaataccaagatg ctttcttaggcctaattagtgaatcagaggaatggattgataaaggtctttcttgttatttggcatttgggagagccagc aatcctgaactgcattatctcctttgttcattatgcttattactcagcaccaataaagaagactgtttcatctgctgcc |
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Protein
| Protein ID | habu1_s2789_g10030.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10030.t1 MPLHKVPPRLWDSLRLQRGILARLPPHYLRALREDAAAPPPAVHWRPPAGEYVRRPGPLEGVRQQVVPVPVYFPPESQEG LWGGEGWVEGYRYAHDDKLSRRLKKVWKPQIFNREFYSEILDKKLRIAITMRTLEQIDKAFGFDFYILKTPKSELCSKLG MDLKRTLLLRLARKDPSLHPDDPSKRKTVYNKYKEFVIPEEEAEWIGLSLEEAVEKQRVLEKKDPVPLFRVYAEELILHL QKQQKA |
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