Gene
| Gene Model ID | habu1_s2789_g10038 |
|---|---|
| Locus | habu1_scaffold2789 : 1028597 ... 1035617 : - |
| To GenomeBrowser | habu1_scaffold2789:1028597..1035617 |
| Genes list of scaffold | habu1_scaffold2789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2789_g10038.t1 | 1 | 1 | FG-GAP | 93 | 124 | 6.9e-06 | 25.5 | 9.5e-06 | 0.047 | 13.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2789_g10038.t1 | gi|602672461|ref|XP_007441734.1| | PREDICTED: protein ITFG3 [Python bivittatus] | 0.0 |
| habu1_s2789_g10038.t1 | gi|530605499|ref|XP_005294476.1| | PREDICTED: protein ITFG3 [Chrysemys picta bellii] | 0.0 |
| habu1_s2789_g10038.t1 | gi|591384251|ref|XP_007066580.1| | PREDICTED: protein ITFG3 [Chelonia mydas] | 0.0 |
| habu1_s2789_g10038.t1 | gi|557327737|ref|XP_006036817.1| | PREDICTED: protein ITFG3 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s2789_g10038.t1 | gi|564257967|ref|XP_006267928.1| | PREDICTED: protein ITFG3 isoform X1 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 33.7 |
| Venom grand-1 | 71.0 |
| Pit, infrared sensing | 47.5 |
| Nose | 40.4 |
| Brain-1 | 23.1 |
| Eye | 49.0 |
| fetal fibroblast | 47.1 |
| venom gland-2 | 76.9 |
| Brain-2 | 21.7 |
| Spleen | 48.8 |
| Lung | 45.1 |
| Liver | 76.5 |
| Kidney | 96.5 |
| Pancreas | 84.2 |
| Small intestine | 80.8 |
| Large intestine | 51.4 |
| Stomach | 60.7 |
| heart | 41.3 |
| ovary | 66.2 |
| cheek muscle | 117.0 |
Transcript
| Transcript ID | habu1_s2789_g10038.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10038.t1 ggctggtctctgggcgcgtgcagagcgcggtccgccggatggcacgcccggaggcggaggtggagatccacccgcttaag ggccgagaggcgccggcctcgccagggaccgaggctcgggacgccgagaaggaggcgggcggcggcgcgcagcccgagag gctgtcgcagtggcgcaccgcggccttcttcctctcgctctacctctgcctcggcctggccttcgccttctccttcgtca tcccctgcccggtcaggcccgcctcgcggacggcctggagcagggcttacgacgacgccgcggcgtacgccttcctggcg gcgggggacgccgacggggaccgagtgcaagacctgctcgtggccttccaggccggccccggcagccggaacaccagcgg cgccggccatggcacttgctccggaggaggcttcgcgccgccctgtgccttcctggcggcgcattcgggcactaatggca gcacgctgtgggaaaggccagtggcccaggagctgctcctgatggactgttcggtggaacacggcggctctccggcctgc cttgtcatcgggaatccggcttcccttgtcctcctgaacctggagacaggccagactcagtggaatgagacagccatttt tggcgttaactctacagtcctgagtcccttactgaagattcctgatatcgacagagacggtgtgcctgatttcttggtct ttgctgtcacaggagaggagacgaagagcttcttcttttcgggaacatttggcacgcaaaagaaattcagcggaagcctg catttgccaggactgattgggcacctcttgcatatcaccaagagcggagcccattacatcctgttctacacagcaaaggc tctttttgcctactcgctgaaggagctgtatcgcatggctgtgggcccagcaagcccagcccttgccagcctgaaggaag atgcggactgggagatggcgattcatcacaaggcccgacaggtgcctttagccagttctggagacattcagtacgtgaca aagatatcagagaaatcagggagccatattttggttgcaagatcagctatgttggagctggtgaatggacagcaactgag ttcgttgtgggttgttggtgtgccacacattctgagggagcccattcttggagcctttggtcccgatgagattgccgtgg ttattgaaagcagaatctcacctgtgacaaagaaggttacaatcgtggagggcagttctggagccatcaagtgggaagtg gagctgctttcggaaatacagagtcccaagccagcctctcttgcaactgctgatcgcagatccattttcctcttttgggg tctgtaccaagatgaaagaaatgaaactggatcttggcatggaagtcagcagcagcggctgtaccttttccatccctccc tgcccactgtcctcttggaactgagcaatagcactgagcccatagtggcctttgaagggttgctttttgagcgaagccgc catgcctgttacgtgctgctggtaggcccccaggttggcagcccccttgggaaagtgatactctcaaagcggaagctgaa ggaagacattttcagcagccacgtgatctggctcaaccagatgccccaagatactgaccagaatgtccgggactatttcc accgaatgcaattccgtacctttgggtgaagctagccagggagaaggtaaaccgcacttggcttctggaatactttggct agtccaccaccaggacttggatcccataccctggattttgcgtagaggccctaggttaaacagcacatgggggaaagaga gagacattatgcctcctctctgaccatcagagatatccattccccagaggagaaagatcttggaaatggtgcaactgggg tgggggcagttctcagagttatcgtgtgcctggccatctggcttcacttggtcatccttcccactggaacagcggactct gcgcagcttggctatataactgcatcagccccagaagtgccttgagggccctctcagtgtcataattggtttggatccta caatctccctgaagaatcagcaaagcaatcgaagcagctccatcggccttggccacctctgctcccaaagtaatgcacct gggctgtctgatctccagctcacaggcaccgagccatgcaggttagctatgccaggtactaggacatccaactgctcctt gttttcttgctgtggccaagcctcaggtgtggctttttctatcacagttcaaagatggagatgctttgcagagtcggagt tcatttatctgccacagatcatttcaatttcaataaatttagctttggccacaatgttt |
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Protein
| Protein ID | habu1_s2789_g10038.t1 |
|---|---|
| Definition | - |
>habu1_s2789_g10038.t1 MARPEAEVEIHPLKGREAPASPGTEARDAEKEAGGGAQPERLSQWRTAAFFLSLYLCLGLAFAFSFVIPCPVRPASRTAW SRAYDDAAAYAFLAAGDADGDRVQDLLVAFQAGPGSRNTSGAGHGTCSGGGFAPPCAFLAAHSGTNGSTLWERPVAQELL LMDCSVEHGGSPACLVIGNPASLVLLNLETGQTQWNETAIFGVNSTVLSPLLKIPDIDRDGVPDFLVFAVTGEETKSFFF SGTFGTQKKFSGSLHLPGLIGHLLHITKSGAHYILFYTAKALFAYSLKELYRMAVGPASPALASLKEDADWEMAIHHKAR QVPLASSGDIQYVTKISEKSGSHILVARSAMLELVNGQQLSSLWVVGVPHILREPILGAFGPDEIAVVIESRISPVTKKV TIVEGSSGAIKWEVELLSEIQSPKPASLATADRRSIFLFWGLYQDERNETGSWHGSQQQRLYLFHPSLPTVLLELSNSTE PIVAFEGLLFERSRHACYVLLVGPQVGSPLGKVILSKRKLKEDIFSSHVIWLNQMPQDTDQNVRDYFHRMQFRTFG |
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