Gene
| Gene Model ID | habu1_s2857_g10177 |
|---|---|
| Locus | habu1_scaffold2857 : 119686 ... 134533 : + |
| To GenomeBrowser | habu1_scaffold2857:119686..134533 |
| Genes list of scaffold | habu1_scaffold2857 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| stam-binding protein isoform x2 | GO:0000281 GO:0004843 GO:0005634 GO:0005737 GO:0005886 GO:0006508 GO:0014067 GO:0016579 GO:0032154 GO:0043524 GO:0046580 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2857_g10177.t1 | 1 | 1 | USP8_dimer | 16 | 116 | 2.5e-18 | 66.0 | 5.1e-22 | 2.5e-18 | 66.0 |
| habu1_s2857_g10177.t1 | 1 | 1 | JAB | 253 | 359 | 2.0e-19 | 69.4 | 4.0e-23 | 2.0e-19 | 69.4 |
| habu1_s2857_g10177.t1 | 1 | 1 | Prok-JAB | 269 | 353 | 4.3e-08 | 32.6 | 6.0e-11 | 3.0e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2857_g10177.t1 | gi|602649038|ref|XP_007430930.1| | PREDICTED: STAM-binding protein isoform X2 [Python bivittatus] | 0.0 |
| habu1_s2857_g10177.t1 | gi|602649036|ref|XP_007430929.1| | PREDICTED: STAM-binding protein isoform X1 [Python bivittatus] | 0.0 |
| habu1_s2857_g10177.t1 | gi|557297815|ref|XP_006031208.1| | PREDICTED: STAM-binding protein isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s2857_g10177.t1 | gi|564244051|ref|XP_006278794.1| | PREDICTED: STAM-binding protein isoform X1 [Alligator mississippiensis] | 0.0 |
| habu1_s2857_g10177.t1 | gi|514741254|ref|XP_005018458.1| | PREDICTED: STAM-binding protein isoform X1 [Anas platyrhynchos] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.5 |
| Venom grand-1 | 6.5 |
| Pit, infrared sensing | 6.4 |
| Nose | 6.2 |
| Brain-1 | 5.4 |
| Eye | 6.6 |
| fetal fibroblast | 9.3 |
| venom gland-2 | 8.8 |
| Brain-2 | 5.6 |
| Spleen | 5.0 |
| Lung | 4.8 |
| Liver | 6.0 |
| Kidney | 7.0 |
| Pancreas | 6.4 |
| Small intestine | 4.3 |
| Large intestine | 5.8 |
| Stomach | 4.7 |
| heart | 4.6 |
| ovary | 39.3 |
| cheek muscle | 10.2 |
Transcript
| Transcript ID | habu1_s2857_g10177.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10177.t1 ggccgggagcttctgtgcagattaaacctatatgcctgactacgcagatgtcagcctgcccccagaagaccgggtcagag gtcttattcatatggggagtactgtggaggtgaatgaagatgttccaccaaggcgatactaccgttcaggtgttgaaatc atccgaatggcaactatttattctgaagaaggcaacatcgaacgtgcctttatattgtacaacaaatacattacgctttt cttagagaaactccccaagcatcgtgaatataagactgcaatcattccagagaagagagagacagtgaaaaaactaaaag aggttgcgttccctaaagcagaggagttgaaaaaagagcttttagcaaaatacaacaaagaatatgcagagtacaatata cagaagaagaagcaagaggaggaatttgcccgcaccttggccctacagcaacagctggaggaggagaggcagagagtggc tcgcatgaagcaacagcaggccgaacaggagcagttccacgcttttgaagacatgatcaggcgccaggagcttgagaaag agcgcctgagggtggtgcagcaatttgggacagcaactcccggccccttggaggatcccttaatacctggtgtgctcaag ccccccaccgacccccaaacccttatgtctgctggtcaacctttgagccccgctggaggaagtggactaccaaagccgcc catagtggacaggtctctaaaacctggcactttggggaactcagaaaacaatgcagttatagatggtcttcgccacatca ttgtccccagggagctctgtcataaatttctgcagttggcagatgcaaatacagccagaggtgtggagacatgtgggatc ctttgtgggaagctgatgaggaatgaattcacaataacccacgtcattgttcccaagcagcatggagggcctgactattg caacactgagagtgaggaggagctcttcctaatccaggatcagaacagcctgatcaccttgggatggatccatactcatc ctactcaaacagctttcctttccagcgtggatttgcacacccattgctcctatcagatgatgttgccagagtctatcgct atcgtttgttcaccgaagtatcaagagactggattctttaaactgacagaccatgggatggaggagatctcttcctgcag acaaaaaggattccatccccactgcaaagatcctcctctctttataacttgcaaccatgtgaccatcatggaacaagaag tggcagtgctggaccttcgataaggctgcctttatatctcttatcagctattcctgtccttcttaaagctaatttatggt tgcttctctcactttctgtgcagtgatatccagaatcttacctgtaacagcaaagggattttgccttctctttgatcaca tgcaaataataatttggggcatcgctgagaatcagtaaagcaaaattataaactaaaatta |
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Protein
| Protein ID | habu1_s2857_g10177.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10177.t1 MPDYADVSLPPEDRVRGLIHMGSTVEVNEDVPPRRYYRSGVEIIRMATIYSEEGNIERAFILYNKYITLFLEKLPKHREY KTAIIPEKRETVKKLKEVAFPKAEELKKELLAKYNKEYAEYNIQKKKQEEEFARTLALQQQLEEERQRVARMKQQQAEQE QFHAFEDMIRRQELEKERLRVVQQFGTATPGPLEDPLIPGVLKPPTDPQTLMSAGQPLSPAGGSGLPKPPIVDRSLKPGT LGNSENNAVIDGLRHIIVPRELCHKFLQLADANTARGVETCGILCGKLMRNEFTITHVIVPKQHGGPDYCNTESEEELFL IQDQNSLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESIAIVCSPKYQETGFFKLTDHGMEEISSCRQKGFHPHCKD PPLFITCNHVTIMEQEVAVLDLR |
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