Gene
| Gene Model ID | habu1_s2857_g10178 |
|---|---|
| Locus | habu1_scaffold2857 : 136236 ... 156535 : + |
| To GenomeBrowser | habu1_scaffold2857:136236..156535 |
| Genes list of scaffold | habu1_scaffold2857 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| gamma-enteric smooth muscle | GO:0005524 GO:0005829 GO:0008217 GO:0009615 GO:0014829 GO:0015629 GO:0019901 GO:0030485 GO:0043234 GO:0070062 GO:0071944 GO:0072144 GO:0072562 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2857_g10178.t1 | 1 | 1 | Actin | 42 | 414 | 0.0 | 537.0 | 0.0 | 0.0 | 536.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2857_g10178.t1 | gi|625217108|ref|XP_007648877.1| | PREDICTED: actin, gamma-enteric smooth muscle [Cricetulus griseus] | 0.0 |
| habu1_s2857_g10178.t1 | gi|4501889|ref|NP_001606.1| | actin, gamma-enteric smooth muscle isoform 1 precursor [Homo sapiens] | 0.0 |
| habu1_s2857_g10178.t1 | gi|507569425|ref|XP_004668334.1| | PREDICTED: actin, gamma-enteric smooth muscle isoform X1 [Jaculus jaculus] | 0.0 |
| habu1_s2857_g10178.t1 | gi|334313528|ref|XP_003339917.1| | PREDICTED: actin, gamma-enteric smooth muscle isoform X2 [Monodelphis domestica] | 0.0 |
| habu1_s2857_g10178.t1 | gi|543728432|ref|XP_005505301.1| | PREDICTED: actin, gamma-enteric smooth muscle [Columba livia] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 30.5 |
| Venom grand-1 | 22.1 |
| Pit, infrared sensing | 32.9 |
| Nose | 19.2 |
| Brain-1 | 23.4 |
| Eye | 25.8 |
| fetal fibroblast | 2085.2 |
| venom gland-2 | 7.4 |
| Brain-2 | 3.9 |
| Spleen | 184.8 |
| Lung | 710.0 |
| Liver | 57.0 |
| Kidney | 69.9 |
| Pancreas | 37.6 |
| Small intestine | 374.4 |
| Large intestine | 2722.6 |
| Stomach | 6506.8 |
| heart | 9.0 |
| ovary | 22.0 |
| cheek muscle | 201.3 |
Transcript
| Transcript ID | habu1_s2857_g10178.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10178.t1 gtggccagtttggaactgggctgtgcaactgacagaccagcacacgggcgcagccccatgtgcccgagcagcgggtactc gtgcatccccagagcaaagtccctgaggaaaggcgttttcttctgcactcggtcccctgcgaggtcccctgcaccacttt ttatcggagccatgtgtgaagaggagacaacggccttggtttgtgataatggctctgggctgtgcaaggctggctttgct ggggatgatgctcctcgcgcagtcttcccctccattgtgggccgcccacgtcaccagggcgtgatggtggggatggggca gaaagacagctacgtgggggacgaggcccaaagcaagagaggaatcctgactctgaagtaccccattgaacacggcatca tcaccaactgggacgacatggagaagatctggcaccattccttctacaatgaattgcgagtggccccggaagagcacccc acgttgctcacagaggcacccctgaaccccaaggcaaatcgagagaagatgacccagatcatgtttgagaccttcaatgt cccagctatgtacgttgccatccaggcagtgttgtctctttatgcatctggccgaaccactggtatcgtcctggactctg gtgatggcgtcactcacaatgtgcccatttacgaaggttatgccctgcctcatgcaattatgcgcctggatctggctggc cgggaccttacggactacctcatgaaaatccttacagagagaggctactcttttgtcaccaccgctgaaagagaaattgt gcgggacatcaaggagaagttgtgctatgtcgccctggattttgagaatgagatggcaacggcagcttcctcatcatccc tggagaaaagttatgagttgcctgatggacaggtcatcaccattggcaatgagcggttccgttgccctgaaaccctcttc cagccctcattcattggcatggaatcagctggtattcatgagacgacatacaattctatcatgaaatgtgacattgacat ccgcaaggacctctatgccaacaatgttctttcaggaggcaccaccatgtatcctggcattgcagacagaatgcagaagg aaataactgccttggctcccagcacaatgaagataaagatcattgctcctcctgagcgcaaatattctgtttggattgga ggttccattctggcctctctctccaccttccagcagatgtggataagcaagccagaatatgaggaagccggcccctccat agtgcaccggaagtgcttctaaagaaccaaaccagattattctcggatcagaagagtcctttcttctttctttgcattga gttctgaatcttgcaaggagcattaaacactgtttttcaagccaggcag |
|
Protein
| Protein ID | habu1_s2857_g10178.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10178.t1 MCPSSGYSCIPRAKSLRKGVFFCTRSPARSPAPLFIGAMCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFV TTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNS IMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPE YEEAGPSIVHRKCF |
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