Gene
| Gene Model ID | habu1_s2857_g10180 |
|---|---|
| Locus | habu1_scaffold2857 : 184710 ... 208085 : - |
| To GenomeBrowser | habu1_scaffold2857:184710..208085 |
| Genes list of scaffold | habu1_scaffold2857 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2857_g10180.t2 | 3 | 1 | GDNF | 41 | 115 | 3.3e-38 | 130.0 | 9.5e-13 | 1.4e-08 | 35.1 |
| habu1_s2857_g10180.t2 | 3 | 2 | GDNF | 160 | 240 | 3.3e-38 | 130.0 | 2.3e-16 | 3.4e-12 | 46.7 |
| habu1_s2857_g10180.t2 | 3 | 3 | GDNF | 250 | 342 | 3.3e-38 | 130.0 | 9.2e-21 | 1.4e-16 | 60.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2857_g10180.t2 | gi|729730882|ref|XP_010561287.1| | PREDICTED: GDNF family receptor alpha-2 [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 6.8 |
| Venom grand-1 | 4.6 |
| Pit, infrared sensing | 7.6 |
| Nose | 2.3 |
| Brain-1 | 5.3 |
| Eye | 3.5 |
| fetal fibroblast | 1.6 |
| venom gland-2 | 1.4 |
| Brain-2 | 4.7 |
| Spleen | 7.0 |
| Lung | 6.8 |
| Liver | 0.9 |
| Kidney | 3.2 |
| Pancreas | 1.6 |
| Small intestine | 3.1 |
| Large intestine | 14.0 |
| Stomach | 4.0 |
| heart | 3.7 |
| ovary | 3.8 |
| cheek muscle | 1.9 |
Transcript
| Transcript ID | habu1_s2857_g10180.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10180.t1 cgtttagtttccccagcttggagggagaatggcgagctccagttctggccttcggcgccagcaggaccggctggcagagt gctccaggcctggactgagctttccttgccagccaccctgggtgggcacggttggcagagccctgtggactgtgcccatg ccagcgagctttgtactgctgaggctggctgcagctcaagttaccgcactttgcgacagtgcctggctggccgaggccac aacaccctgctgggcaacaaggagtgtcgggcggcactggaggtgctgcagggaagcgctctgcacggctgccgctgcag gcgcagaatgaagaaggagctgtcctgtctgcagacctactggagcctccaccggggcttggctgggggagaagaatttt atgaagcttcgccctacgagcccatcagctctcctctctctgatgccttcagacttgcttcaattgtctcagggaccgac tccgcggtcgcctccaggagcaacccctgcctggacgcagccaaggcctgcaacctgaacgacaactgcaagaagctccg ctccgcctacatctccacctgcaacaaacaggtctcggccactgagcactgcagccggcataagtgccacaaagccctgc gccatttttttgaccgggtacccagcgcatacagctaccggctgcttttctgctcctgcaaggaccaggcctgtgcagaa cgccgccggcagaccatcgtccccgactgctcctaccaggagagagagacgcccaactgcctggctctgcggagccggtg ccgagcggagccattctgccggtcaagactggcagatttccatgccaactgccaagccttcaccagctgctccaggggca actaccaggcgtgcctggatgcctacgctggcctgataggtttggacctgacccccaactatgtggatgcaagcttcagc agcccgatggtctccctgtggtgctcctgccgagggagtggcaacatggaggaggaatgtgagaaattcctgaaggactt caccgaaaacgcttgtctccgaaatgcgattcaggcctttggcaatggcagtggcctgaccttcttccccaaggccctcc cgccaccactccccaccctgcctccctcagcaggaagggcttcgtctttgccctacaacgtaaatgacagcagccttggc aataacacgggcgtgagcaccacatgcgcctccgccgaggaaagtggagcaaagattaaccagtccaaagatcagagtct ttgcttctcagagaaatcactgaccacagctctcatgccagagcagaagacttttgtggacaccagaggatcaggcagcc aactttccttcacaggaaccgtctctgctctcctcttcttccttgtgaaaatgaccatataggaggaacctggaataaga cttgctgggagagggtgtggagagggccgtgcaaactcccctccacctgtaggccgtccagaactctccctcagccgttg ccttctggagagctgctcccaaggaggcaccacagctcttgtagaggcctctgtgagacaagtcttcattgtgtaagcat tgccatgatgagtgtggaggcccttagtagagacatctggcctgggaatccaggctcatttctttccaaggatcccaaac atgggctgaagtcccaccagtttaccatcagtgtttaaaagggatccaaggaattagctagacaattcagaggagctgga gggcttgcctcacactgcccggcttttgctctgcaggatgaaggcagccattccccatccccaagtcaccacccaaatca tttttgctgcttgaaaatgttctaaaacaggtttgatttccgttaaactcagaggattctcagaagcatctgaacttcat cttaggagagtggaaagtgagtgaaatgcttacaaagctggtagcctcccttaggcagaagccttgaaggggttggactg gctggctggagtgcgtacagagctgtgcctcatggaacaaggaatacgaccacaggtccggtggagtttcttgttcagct gattcttctgattctcctgtccatctcttcatccttcatcctgccgtctcgggtggaagcatccagataggccagcattg atcccaccagacatatatattgatgttttctcctgcttcctttcatgttgttttttcaagtctaaaaataagaacaaaag atgaaatatgaatattataaagtttagttttctaaagcataactacagcagggagccctgagcagccctgtggccagtgc aggattggtcgaccggagagcaggggagcagtttgcagataactcaataaacgcttattgagaaaccaaccag |
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| Transcript ID | habu1_s2857_g10180.t2 |
| Definition | - |
>habu1_s2857_g10180.t2 atccgccctcgcggccgccgcgatgctgcccgggcagcccgagagggcgccgcctccgcctcgccgcggctgagggagac ccaggctcttccgacgccccgcgccctgccgagggagccgcccgccatggcccgcgccctccgcctcctccgcctcctcc tggccctgggcagagtgctccaggcctggactgagctttccttgccagccaccctgggtgggcacggttggcagagccct gtggactgtgcccatgccagcgagctttgtactgctgaggctggctgcagctcaagttaccgcactttgcgacagtgcct ggctggccgaggccacaacaccctgctgggcaacaaggagtgtcgggcggcactggaggtgctgcagggaagcgctctgc acggctgccgctgcaggcgcagaatgaagaaggagctgtcctgtctgcagacctactggagcctccaccggggcttggct gggggagaagaattttatgaagcttcgccctacgagcccatcagctctcctctctctgatgccttcagacttgcttcaat tgtctcagggaccgactccgcggtcgcctccaggagcaacccctgcctggacgcagccaaggcctgcaacctgaacgaca actgcaagaagctccgctccgcctacatctccacctgcaacaaacaggtctcggccactgagcactgcagccggcataag tgccacaaagccctgcgccatttttttgaccgggtacccagcgcatacagctaccggctgcttttctgctcctgcaagga ccaggcctgtgcagaacgccgccggcagaccatcgtccccgactgctcctaccaggagagagagacgcccaactgcctgg ctctgcggagccggtgccgagcggagccattctgccggtcaagactggcagatttccatgccaactgccaagccttcacc agctgctccaggggcaactaccaggcgtgcctggatgcctacgctggcctgataggtttggacctgacccccaactatgt ggatgcaagcttcagcagcccgatggtctccctgtggtgctcctgccgagggagtggcaacatggaggaggaatgtgaga aattcctgaaggacttcaccgaaaacgcttgtctccgaaatgcgattcaggcctttggcaatggcagtggcctgaccttc ttccccaaggccctcccgccaccactccccaccctgcctccctcagcaggaagggcttcgtctttgccctacaacgtaaa tgacagcagccttggcaataacacgggcgtgagcaccacatgcgcctccgccgaggaaagtggagcaaagattaaccagt ccaaagatcagagtctttgcttctcagagaaatcactgaccacagctctcatgccagagcagaagacttttgtggacacc agaggatcaggcagccaactttccttcacaggaaccgtctctgctctcctcttcttccttgtgaaaatgaccatatagga ggaacctggaataagacttgctgggagagggtgtggagagggccgtgcaaactcccctccacctgtaggccgtccagaac tctccctcagccgttgccttctggagagctgctcccaaggaggcaccacagctcttgtagaggcctctgtgagacaagtc ttcattgtgtaagcattgccatgatgagtgtggaggcccttagtagagacatctggcctgggaatccaggctcatttctt tccaaggatcccaaacatgggctgaagtcccaccagtttaccatcagtgtttaaaagggatccaaggaattagctagaca attcagaggagctggagggcttgcctcacactgcccggcttttgctctgcaggatgaaggcagccattccccatccccaa gtcaccacccaaatcatttttgctgcttgaaaatgttctaaaacaggtttgatttccgttaaactcagaggattctcaga agcatctgaacttcatcttaggagagtggaaagtgagtgaaatgcttacaaagctggtagcctcccttaggcagaagcct tgaaggggttggactggctggctggagtgcgtacagagctgtgcctcatggaacaaggaatacgaccacaggtccggtgg agtttcttgttcagctgattcttctgattctcctgtccatctcttcatccttcatcctgccgtctcgggtggaagcatcc agataggccagcattgatcccaccagacatatatattgatgttttctcctgcttcctttcatgttgttttttcaagtcta aaaataagaacaaaagatgaaatatgaatattataaagtttagttttctaaagcataactacagcagggagccctgagca gccctgtggccagtgcaggattggtcgaccggagagcaggggagcagtttgcagataactcaataaacgcttattgagaa accaaccag |
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Protein
| Protein ID | habu1_s2857_g10180.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10180.t1 MKKELSCLQTYWSLHRGLAGGEEFYEASPYEPISSPLSDAFRLASIVSGTDSAVASRSNPCLDAAKACNLNDNCKKLRSA YISTCNKQVSATEHCSRHKCHKALRHFFDRVPSAYSYRLLFCSCKDQACAERRRQTIVPDCSYQERETPNCLALRSRCRA EPFCRSRLADFHANCQAFTSCSRGNYQACLDAYAGLIGLDLTPNYVDASFSSPMVSLWCSCRGSGNMEEECEKFLKDFTE NACLRNAIQAFGNGSGLTFFPKALPPPLPTLPPSAGRASSLPYNVNDSSLGNNTGVSTTCASAEESGAKINQSKDQSLCF SEKSLTTALMPEQKTFVDTRGSGSQLSFTGTVSALLFFLVKMTI |
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| Protein ID | habu1_s2857_g10180.t2 |
| Definition | - |
>habu1_s2857_g10180.t2 MARALRLLRLLLALGRVLQAWTELSLPATLGGHGWQSPVDCAHASELCTAEAGCSSSYRTLRQCLAGRGHNTLLGNKECR AALEVLQGSALHGCRCRRRMKKELSCLQTYWSLHRGLAGGEEFYEASPYEPISSPLSDAFRLASIVSGTDSAVASRSNPC LDAAKACNLNDNCKKLRSAYISTCNKQVSATEHCSRHKCHKALRHFFDRVPSAYSYRLLFCSCKDQACAERRRQTIVPDC SYQERETPNCLALRSRCRAEPFCRSRLADFHANCQAFTSCSRGNYQACLDAYAGLIGLDLTPNYVDASFSSPMVSLWCSC RGSGNMEEECEKFLKDFTENACLRNAIQAFGNGSGLTFFPKALPPPLPTLPPSAGRASSLPYNVNDSSLGNNTGVSTTCA SAEESGAKINQSKDQSLCFSEKSLTTALMPEQKTFVDTRGSGSQLSFTGTVSALLFFLVKMTI |
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