Gene
| Gene Model ID | habu1_s2857_g10194 |
|---|---|
| Locus | habu1_scaffold2857 : 374972 ... 376675 : - |
| To GenomeBrowser | habu1_scaffold2857:374972..376675 |
| Genes list of scaffold | habu1_scaffold2857 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rnf181 | EC:6.3.2.19 GO:0004842 GO:0008270 GO:0051865 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2857_g10194.t2 | 1 | 1 | zf-RING_2 | 80 | 122 | 4.9e-16 | 58.2 | 1.0e-18 | 7.6e-16 | 57.6 |
| habu1_s2857_g10194.t2 | 1 | 1 | zf-RING_5 | 80 | 123 | 9.7e-08 | 31.6 | 1.9e-10 | 1.4e-07 | 31.0 |
| habu1_s2857_g10194.t2 | 1 | 1 | zf-C3HC4_3 | 80 | 124 | 3.7e-07 | 29.7 | 7.3e-10 | 5.4e-07 | 29.1 |
| habu1_s2857_g10194.t2 | 1 | 1 | zf-C3HC4_2 | 81 | 121 | 3.5e-08 | 33.3 | 6.9e-11 | 5.1e-08 | 32.8 |
| habu1_s2857_g10194.t2 | 1 | 1 | zf-C3HC4 | 81 | 121 | 6.2e-08 | 32.1 | 1.3e-10 | 9.7e-08 | 31.5 |
| habu1_s2857_g10194.t2 | 1 | 1 | zf-rbx1 | 81 | 122 | 3.5e-07 | 30.2 | 1.1e-09 | 8.5e-07 | 28.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2857_g10194.t2 | gi|395508778|ref|XP_003758686.1| | PREDICTED: E3 ubiquitin-protein ligase RNF181 [Sarcophilus harrisii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 30.5 |
| Venom grand-1 | 66.9 |
| Pit, infrared sensing | 39.9 |
| Nose | 29.1 |
| Brain-1 | 12.6 |
| Eye | 30.1 |
| fetal fibroblast | 52.1 |
| venom gland-2 | 60.6 |
| Brain-2 | 13.0 |
| Spleen | 57.2 |
| Lung | 39.9 |
| Liver | 107.0 |
| Kidney | 72.8 |
| Pancreas | 113.4 |
| Small intestine | 86.9 |
| Large intestine | 49.4 |
| Stomach | 69.2 |
| heart | 51.9 |
| ovary | 54.0 |
| cheek muscle | 101.6 |
Transcript
| Transcript ID | habu1_s2857_g10194.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10194.t1 aggccgaaagacgcgacggttggcgggatcccgcgatgcacgccatcgggtctctcttccacggcctggagatcgacgtg ggcgcgctgcggggcggcgactgggagcaccgacttcccccgccggccgccagacgggccgtggagggcctgcccgaggt ccgcgtcagcgccccgcaagcagcgaaggggctccagtgcccggtgtgcctgctggagttcgaggcggcggaggcggtga ggacgatgccctgccagcacctcttccacgccggctgccttcttccctggctcggaaagaccaattcctgcccgctgtgc cgccacgagctgcccaccgacgaccaggagtacgaggagcacaaggaggagaaggctcggaggcagcagcaagtgcaccg actggagtatctgcatggcgcgatgtacacgtgaccctacagtgttgccttcatcatctggggcaacgacagcagggatt ttcccagttgcaaagggcagaagcagcttccggggacaaggaacgcagcgctcgcaagtggtgcccctgtccttctcctc gggagtgacatgcaaaccttctcaatgctttttctaagcaagcccccaaacacgcagagagctcagagtgatttttgaaa aataaaggtagcaaatgtctttgctttc |
|
| Transcript ID | habu1_s2857_g10194.t2 |
| Definition | - |
>habu1_s2857_g10194.t2 ggctggctgggtggcgtggagccgggctcctcctcccggggccgcgcggagccaggagggcttcgggggcgggggcgggg gcgggggaagccagaggcccgcccggattggccgcctgccggggcgccggccaggagggcgcgggcggggcctgcctccc gtcgcggccatggcgtcctacttcgaggaacacgactgcgagcccggggccgcgccgggggaccgcctgccgccgcgccg cgccctgctggagctggccaggtctctcttccacggcctggagatcgacgtgggcgcgctgcggggcggcgactgggagc accgacttcccccgccggccgccagacgggccgtggagggcctgcccgaggtccgcgtcagcgccccgcaagcagcgaag gggctccagtgcccggtgtgcctgctggagttcgaggcggcggaggcggtgaggacgatgccctgccagcacctcttcca cgccggctgccttcttccctggctcggaaagaccaattcctgcccgctgtgccgccacgagctgcccaccgacgaccagg agtacgaggagcacaaggaggagaaggctcggaggcagcagcaagtgcaccgactggagtatctgcatggcgcgatgtac acgtgaccctacagtgttgccttcatcatctggggcaacgacagcagggattttcccagttgcaaagggcagaagcagct tccggggacaaggaacgcagcgctcgcaagtggtgcccctgtccttctcctcgggagtgacatgcaaaccttctcaatgc tttttctaagcaagcccccaaacacgcagagagctcagagtgatttttgaaaaataaaggtagcaaatgtctttgctttc |
|
Protein
| Protein ID | habu1_s2857_g10194.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10194.t1 MHAIGSLFHGLEIDVGALRGGDWEHRLPPPAARRAVEGLPEVRVSAPQAAKGLQCPVCLLEFEAAEAVRTMPCQHLFHAG CLLPWLGKTNSCPLCRHELPTDDQEYEEHKEEKARRQQQVHRLEYLHGAMYT |
|
| Protein ID | habu1_s2857_g10194.t2 |
| Definition | - |
>habu1_s2857_g10194.t2 MASYFEEHDCEPGAAPGDRLPPRRALLELARSLFHGLEIDVGALRGGDWEHRLPPPAARRAVEGLPEVRVSAPQAAKGLQ CPVCLLEFEAAEAVRTMPCQHLFHAGCLLPWLGKTNSCPLCRHELPTDDQEYEEHKEEKARRQQQVHRLEYLHGAMYT |
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