Gene
| Gene Model ID | habu1_s2857_g10210 |
|---|---|
| Locus | habu1_scaffold2857 : 678610 ... 685843 : - |
| To GenomeBrowser | habu1_scaffold2857:678610..685843 |
| Genes list of scaffold | habu1_scaffold2857 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| bifunctional methylenetetrahydrofolate dehydrogenase mitochondrial | EC:1.5.1.15 EC:1.5.1.5 GO:0000287 GO:0004487 GO:0004488 GO:0005615 GO:0005739 GO:0009396 GO:0042301 GO:0046487 GO:0046653 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s2857_g10210.t1 | 1 | 1 | THF_DHG_CYH | 46 | 162 | 6.7e-38 | 129.3 | 1.29998e-41 | 9.9e-38 | 128.7 |
| habu1_s2857_g10210.t1 | 1 | 1 | THF_DHG_CYH_C | 165 | 337 | 0.0 | 210.3 | 0.0 | 0.0 | 210.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s2857_g10210.t1 | gi|530585566|ref|XP_005286565.1| | PREDICTED: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial [Chrysemys picta bellii] | 0.0 |
| habu1_s2857_g10210.t1 | gi|557297809|ref|XP_006031205.1| | PREDICTED: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s2857_g10210.t1 | gi|637369973|ref|XP_003229576.2| | PREDICTED: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial [Anolis carolinensis] | 0.0 |
| habu1_s2857_g10210.t1 | gi|557297811|ref|XP_006031206.1| | PREDICTED: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s2857_g10210.t1 | gi|602653641|ref|XP_007432674.1| | PREDICTED: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 10.2 |
| Venom grand-1 | 11.7 |
| Pit, infrared sensing | 12.8 |
| Nose | 24.1 |
| Brain-1 | 5.4 |
| Eye | 15.2 |
| fetal fibroblast | 22.2 |
| venom gland-2 | 33.2 |
| Brain-2 | 7.3 |
| Spleen | 8.0 |
| Lung | 7.3 |
| Liver | 3.0 |
| Kidney | 1.7 |
| Pancreas | 4.1 |
| Small intestine | 2.4 |
| Large intestine | 4.5 |
| Stomach | 4.6 |
| heart | 3.2 |
| ovary | 90.3 |
| cheek muscle | 9.4 |
Transcript
| Transcript ID | habu1_s2857_g10210.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10210.t1 aatcgccgagttccccgcgggcgtcatccacctacgcaagagccctctccgttcagccaatggggccgcgggtgcggggc ggagtctcccgacggagtttttataaggggcctcccctccgccttcagccattgctccgctcctcccctgccggcggttt ctgtgcggctcgcgcagcgactatggcgcctctggggtacccgcgcttgctcctccgagcctccgcccaggccgctttgg gagggggctgcggctgcagacgcctaccgagggctgggcgccgcctgcacctgacggctgccaggaatgaagcagttgtc atttctggacagaagctggcccggcagattaggcaagaagcctgccacgaagtggaacagtgggttgctgctggccacaa aaggccccacctcagcgtggttctagtgggagaaaatcctgccagccactcctacgtgctgaacaagacccgagcggccg ctgacgtgggaattagtagcgagacaatcctgaaaccggcctctgtcacagaggaggagctgcttgatttaattgtcaaa ctaaaccacgataccaatgttgatggcttgcttgtgcagcttcctttaccagagcacattgacgagcgaaaggtctgcaa tgctgtgaaccccgagaaggatgtggatggattccatgtggtgaacgtaggccgcatgtgcctggaccaatattccatgt tgcccgccaccccatggggcgtatgggagatcatcaagaggacagggatcccaaccctgggcaagaacgtggtggtggct gggcgatccaagaacgtcggcatgcccattgcaatgctgctccacaccgatggacggcacgagcgcccaggaggggatgc aacggtaacaatttctcaccgctacactccaaaagagcagctcaaacagcacacaatccttgctgacattgtggttgcag ctgcaggcattcccaatctgattacagctgatatgatcaaagaaggagctgctgtaattgatgttggcataaacagaatc caggatcctgtcactgccaagccaaaacttgttggagatgtggattttgaaggagtcaaacaaaaagccagttacatcac gccagtccctggtggggtcggccccatgactgttgctatgctcatgaaaaacaccattattgctgccaagaaaatgctga gagcccagcatcttgaaaccttcagtgcttgatgatggacttcttgtggccaaaagtgacattccagattgtctcccaac aataggctagaagccctagaagcaatgcagtatttatttatttgatgaaatgttttggctagctgctctgcaatatttat ataaagcacttttcctccaaagcagagtagctcttgccagttgtacacatgattccgacctttcaaactgctattctgaa atgcaggaaatgagaacacaacttgaatgggaaagtaggcagcctgaaagagtaacaaagggccaaaaatgtgtctttgt agtagaaatgttttaacatacacttgaactgactaacccggctgaacccaagatataaattatttgttaggattatagtg cagctaatctggagtcaaaagttactattttctacaaagccatatttatatttgataatgcctagcaaagcagttgatag cctgatcaatactcaattttttcctgttttaaaggaagaattggcttgaaagcttgacgatgcttagacaaaataaggtg agctctccatgcttattccaacttgctttgtgtttatcgggcaagtagtaatattgcaggatgtacctgaataaaaacaa ttgttatttgcttgtaa |
|
Protein
| Protein ID | habu1_s2857_g10210.t1 |
|---|---|
| Definition | - |
>habu1_s2857_g10210.t1 MAPLGYPRLLLRASAQAALGGGCGCRRLPRAGRRLHLTAARNEAVVISGQKLARQIRQEACHEVEQWVAAGHKRPHLSVV LVGENPASHSYVLNKTRAAADVGISSETILKPASVTEEELLDLIVKLNHDTNVDGLLVQLPLPEHIDERKVCNAVNPEKD VDGFHVVNVGRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGRHERPGGDATVTISHR YTPKEQLKQHTILADIVVAAAGIPNLITADMIKEGAAVIDVGINRIQDPVTAKPKLVGDVDFEGVKQKASYITPVPGGVG PMTVAMLMKNTIIAAKKMLRAQHLETFSA |
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