Gene
| Gene Model ID | habu1_s3002_g10674 |
|---|---|
| Locus | habu1_scaffold3002 : 425458 ... 499347 : + |
| To GenomeBrowser | habu1_scaffold3002:425458..499347 |
| Genes list of scaffold | habu1_scaffold3002 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen alpha-3 chain | GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3002_g10674.t1 | 23 | 1 | Collagen | 17 | 72 | 0.0 | 523.1 | 1.5e-11 | 2.3e-07 | 30.2 |
| habu1_s3002_g10674.t1 | 23 | 2 | Collagen | 89 | 146 | 0.0 | 523.1 | 8.6e-11 | 1.3e-06 | 27.8 |
| habu1_s3002_g10674.t1 | 23 | 3 | Collagen | 130 | 187 | 0.0 | 523.1 | 3.0e-08 | 0.00045 | 19.7 |
| habu1_s3002_g10674.t1 | 23 | 4 | Collagen | 192 | 248 | 0.0 | 523.1 | 6.7e-13 | 9.9e-09 | 34.6 |
| habu1_s3002_g10674.t1 | 23 | 5 | Collagen | 254 | 314 | 0.0 | 523.1 | 2.4e-08 | 0.00035 | 20.0 |
| habu1_s3002_g10674.t1 | 23 | 6 | Collagen | 294 | 346 | 0.0 | 523.1 | 1.0e-11 | 1.5e-07 | 30.8 |
| habu1_s3002_g10674.t1 | 23 | 7 | Collagen | 321 | 378 | 0.0 | 523.1 | 4.9e-10 | 7.3e-06 | 25.4 |
| habu1_s3002_g10674.t1 | 23 | 8 | Collagen | 390 | 448 | 0.0 | 523.1 | 1.2e-12 | 1.8e-08 | 33.7 |
| habu1_s3002_g10674.t1 | 23 | 9 | Collagen | 456 | 508 | 0.0 | 523.1 | 9.1e-13 | 1.4e-08 | 34.1 |
| habu1_s3002_g10674.t1 | 23 | 10 | Collagen | 498 | 555 | 0.0 | 523.1 | 5.7e-11 | 8.5e-07 | 28.4 |
| habu1_s3002_g10674.t1 | 23 | 11 | Collagen | 563 | 604 | 0.0 | 523.1 | 3.8e-10 | 5.6e-06 | 25.8 |
| habu1_s3002_g10674.t1 | 23 | 12 | Collagen | 607 | 653 | 0.0 | 523.1 | 2.3e-11 | 3.4e-07 | 29.6 |
| habu1_s3002_g10674.t1 | 23 | 13 | Collagen | 658 | 716 | 0.0 | 523.1 | 1.5e-13 | 2.3e-09 | 36.6 |
| habu1_s3002_g10674.t1 | 23 | 14 | Collagen | 698 | 753 | 0.0 | 523.1 | 2.3e-07 | 0.0033 | 16.9 |
| habu1_s3002_g10674.t1 | 23 | 15 | Collagen | 761 | 818 | 0.0 | 523.1 | 1.8e-13 | 2.7e-09 | 36.4 |
| habu1_s3002_g10674.t1 | 23 | 16 | Collagen | 797 | 851 | 0.0 | 523.1 | 2.5e-11 | 3.7e-07 | 29.6 |
| habu1_s3002_g10674.t1 | 23 | 17 | Collagen | 860 | 914 | 0.0 | 523.1 | 1.1e-11 | 1.7e-07 | 30.6 |
| habu1_s3002_g10674.t1 | 23 | 18 | Collagen | 908 | 964 | 0.0 | 523.1 | 3.5e-13 | 5.3e-09 | 35.5 |
| habu1_s3002_g10674.t1 | 23 | 19 | Collagen | 969 | 1021 | 0.0 | 523.1 | 2.2e-12 | 3.2e-08 | 32.9 |
| habu1_s3002_g10674.t1 | 23 | 20 | Collagen | 1002 | 1057 | 0.0 | 523.1 | 2.0e-12 | 3.0e-08 | 33.1 |
| habu1_s3002_g10674.t1 | 23 | 21 | Collagen | 1061 | 1112 | 0.0 | 523.1 | 8.7e-13 | 1.3e-08 | 34.2 |
| habu1_s3002_g10674.t1 | 23 | 22 | Collagen | 1122 | 1177 | 0.0 | 523.1 | 2.4e-10 | 3.5e-06 | 26.4 |
| habu1_s3002_g10674.t1 | 23 | 23 | Collagen | 1168 | 1224 | 0.0 | 523.1 | 4.6e-13 | 6.8e-09 | 35.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3002_g10674.t1 | gi|637277038|ref|XP_008104462.1| | PREDICTED: collagen alpha-3(IV) chain [Anolis carolinensis] | 0.0 |
| habu1_s3002_g10674.t1 | gi|530577371|ref|XP_005282637.1| | PREDICTED: collagen alpha-3(IV) chain [Chrysemys picta bellii] | 0.0 |
| habu1_s3002_g10674.t1 | gi|558147811|ref|XP_006119972.1| | PREDICTED: collagen alpha-3(IV) chain [Pelodiscus sinensis] | 0.0 |
| habu1_s3002_g10674.t1 | gi|513199311|ref|XP_001234730.3| | PREDICTED: collagen alpha-3(IV) chain [Gallus gallus] | 0.0 |
| habu1_s3002_g10674.t1 | gi|701418075|ref|XP_009999966.1| | PREDICTED: collagen alpha-3(IV) chain [Chaetura pelagica] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.1 |
| Nose | 0.1 |
| Brain-1 | 0.7 |
| Eye | 0.2 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.2 |
| Spleen | 0.1 |
| Lung | 14.8 |
| Liver | 0.0 |
| Kidney | 3.7 |
| Pancreas | 0.0 |
| Small intestine | 0.1 |
| Large intestine | 0.0 |
| Stomach | 0.0 |
| heart | 0.1 |
| ovary | 3.8 |
| cheek muscle | 0.4 |
Transcript
| Transcript ID | habu1_s3002_g10674.t1 |
|---|---|
| Definition | - |
>habu1_s3002_g10674.t1 gtcctcgacttacgaccggtttagtcctcgacttatgaccggttggggttgcggcattaaaaagggtaagccaggagttc ctggttactctggtcctccaggtcttccaggtgaacctggaaatgctggcccttctggacctccaggtataccaggatgc aatggaacaaagggtgagcaaggttttccaggactcttaggacagggaggacctccaggattaccaggttctaagggcat caaaggagaaaagggagcttctgcaaatgggttcaatcaaagttacagttcttctaaaggagatcctggattgctaggaa tgcctggatttcagggtgagccaggatttcaaggattacctgggacaattggaccacaaggccctccaggttttccaggt atcatgggtgttgatgttattggattcaaaggaataaaaggtgattgtggactaataggtcctcctggaccaagtggaac ggttattataacattaactggagcagaaaatacaacggaattaaaaggagataaaggagaccaaggttctccaggacatc ccggactcccaggagaaccaggtttacatggtgattcccatactataaaaggagacccaggaccacctggtcatcagggc agggcaggcaagaatggtgctcctggctcacctggtctgcggggagaaaaaggtcaaaatggtttgctaggattgcctgg aaaagttggaactaaggggataaaaggtgaagttggtcctatgggaaatgaaggtccaactgagtattatgatggaatgc ctggaataaaaggaaataagggcttcttaggatctccaggacctaaaggtcagcgtggaccaataggttcacagggtccc tctggtgccattggaggtccaggtatttcaagacctggtctaaggggtgtgccaggttcgccaggcctcaaaggaaagaa aggagagagaggacaaccaggaatcaatgctattggatcaccaggacatcctggatttccaggcccacctggcccagcag gaacagtaggtcctttaggacaaccaggtacaataacttttgaaaaaggtccagaaggaactccgggaagcccaggatgt ataggtcctccaggcctattaggagatgatggagaaaaaggtgaagaatcaggcccatgtaccaaatgtacttatattat gggacaccctggccatcacggcattgctggagaagagggtcagcagggtaggaaaggtgtggaaggaatatttggtccta aaggatccccaggatctcctgggcaggcagggactcctggagatcaaggatttacaggccttccaggaaacaaaggtctt aaaggatccaaaggagacccaaacctgatgcatctggaaggtcccaaaggagataacggagaaccaggaatcagaggaaa caccggagaaaaggggttggatggaatacccgggaaacctggacagaaaggcgaaaaaggttctgctggaacacagggat ctgatggttcaaaaggtgacagaggattaccaggatcagttggcagcccaggtcttcctggtaagatagggctaacaggg ccaccaggatatggacttcaaggaaagaatggttcaaaaggatctcaaggaaatcctggattgcctgggttaccaggtgt acctggttctagaggggaccctgcaatagtaaaggcaattcctggaccaccagggcttcaagggccagaaggtagagatg gactacaaggaagaagaggtaacatgggatccagaggacaaaggggtgacccaggtcttcctggacaagatggggatcca ggcttagcagagaatggatttcctggttgttctggtcagaaaggagataaaggaactcaaggacctaaaggagtacctgg ttgtccaggaaacgcagggaatcctggcttacctggaaaacctggagtgccaggacaaaagggtgaaccaggtccattta ttcctggacaacatggaagtattggctttccaggagaagaggggaagttgggtgaaaagggtgaaagaggatcatcaggt ttacctggagctccaggtcaaaaaggttttgaaggtgctgatggaccaaaaggggagcttggagctcctggagctccagg agagaaaggtcttccaggaaaaattggtcactgtctcactggtttaccaggaaaaccaggccaatgtggagtaatgggac cacaagggatcagaggaacagtaggagctaaaggagatccaggtattccgggattagatatcccaggatttccaggacga tttggacttcctggattacagggccctgaaggaaataaaggattgcctggcatcaaaggacaacgtggtaagccaggaat gccaggcacaccaggtttcagaggagaaagaggtttgatgggacacgtaggtagccctggattgcctggtgcctctggaa aaccaggaatccctggaggcagaggttctccaggctttccaggaccaagaggaatgaaaggaactttaggagaaaagggt gaactaggtgataaaggtcctcctgggctatcagaatctaaagagatctacggagataaaggagagagaggaagtaaagg acctcctggaagaacaggactcaagggagaaaaaggtcagcaaggtgtgcaaggatatgtgggtcctgttggaccaccag gtactctacggccaccaggagctaaaggagctaagggactttcaggaattcctggaatatatggattgccaggagttcca ggagacagaggagacatgggaatgcaaggtcctaaagggcaggaaggttcttcaggtttgcctggatccccaggtgtagc aggcccacctggctttcctggtattccaggggataaaggagaacctaaacctggtactgggcctccaggaaacccaggac ctaagggtaatccaggtcttcttggagagaggggaagaaagggggcaagtggatcaccaggccacccaggtcttactgga gtacctggactacctggaaacagaggggatactggtttaccaggaattacaggtccatttggatggcctggtgaaaatgg attagttggtgaaaagggtaatcaaggacatgatggtacttatggtccacctggagaaacaggagcacaaggttccccag ggcaacaaattcctggccctaaaggacttcctggacctaaaggtatcaaaggagatatgggagtagctggttctccagga ctacaaggcattaaaggtgttatgggagacgaaggacctagtggatctcctggtttacctggaccaccaggaattccagg aaaaccagggacaatacttagcctcaaaggaaatagaggtcctcctggcccaaatggaaatccaggtgttcctggtagcc caggacctgctggagtcccaggttacagcataaaagggaacaaaggtgtccgaggaactgatggaattccaggcccacca ggaatgaaaggtgatgatggcccacctggtatgccaggaattgagggtgtacctggctatcagggctctgatggtgaact tggctttccaggattaccaggaataaaaggagaaaagggcaatcaaggaccacgtggaccaaccggaatagcagggcctc gagggccaacaggactacctggtagcaaatatacttgatctattttacttaattgtcttggatttgtaatgataaataat tgtaattgtaaagaatggcaattaatctataatggtaatggtatataaataaacaaagaaccctttatttgcttg |
|
Protein
| Protein ID | habu1_s3002_g10674.t1 |
|---|---|
| Definition | - |
>habu1_s3002_g10674.t1 MTGWGCGIKKGKPGVPGYSGPPGLPGEPGNAGPSGPPGIPGCNGTKGEQGFPGLLGQGGPPGLPGSKGIKGEKGASANGF NQSYSSSKGDPGLLGMPGFQGEPGFQGLPGTIGPQGPPGFPGIMGVDVIGFKGIKGDCGLIGPPGPSGTVIITLTGAENT TELKGDKGDQGSPGHPGLPGEPGLHGDSHTIKGDPGPPGHQGRAGKNGAPGSPGLRGEKGQNGLLGLPGKVGTKGIKGEV GPMGNEGPTEYYDGMPGIKGNKGFLGSPGPKGQRGPIGSQGPSGAIGGPGISRPGLRGVPGSPGLKGKKGERGQPGINAI GSPGHPGFPGPPGPAGTVGPLGQPGTITFEKGPEGTPGSPGCIGPPGLLGDDGEKGEESGPCTKCTYIMGHPGHHGIAGE EGQQGRKGVEGIFGPKGSPGSPGQAGTPGDQGFTGLPGNKGLKGSKGDPNLMHLEGPKGDNGEPGIRGNTGEKGLDGIPG KPGQKGEKGSAGTQGSDGSKGDRGLPGSVGSPGLPGKIGLTGPPGYGLQGKNGSKGSQGNPGLPGLPGVPGSRGDPAIVK AIPGPPGLQGPEGRDGLQGRRGNMGSRGQRGDPGLPGQDGDPGLAENGFPGCSGQKGDKGTQGPKGVPGCPGNAGNPGLP GKPGVPGQKGEPGPFIPGQHGSIGFPGEEGKLGEKGERGSSGLPGAPGQKGFEGADGPKGELGAPGAPGEKGLPGKIGHC LTGLPGKPGQCGVMGPQGIRGTVGAKGDPGIPGLDIPGFPGRFGLPGLQGPEGNKGLPGIKGQRGKPGMPGTPGFRGERG LMGHVGSPGLPGASGKPGIPGGRGSPGFPGPRGMKGTLGEKGELGDKGPPGLSESKEIYGDKGERGSKGPPGRTGLKGEK GQQGVQGYVGPVGPPGTLRPPGAKGAKGLSGIPGIYGLPGVPGDRGDMGMQGPKGQEGSSGLPGSPGVAGPPGFPGIPGD KGEPKPGTGPPGNPGPKGNPGLLGERGRKGASGSPGHPGLTGVPGLPGNRGDTGLPGITGPFGWPGENGLVGEKGNQGHD GTYGPPGETGAQGSPGQQIPGPKGLPGPKGIKGDMGVAGSPGLQGIKGVMGDEGPSGSPGLPGPPGIPGKPGTILSLKGN RGPPGPNGNPGVPGSPGPAGVPGYSIKGNKGVRGTDGIPGPPGMKGDDGPPGMPGIEGVPGYQGSDGELGFPGLPGIKGE KGNQGPRGPTGIAGPRGPTGLPGSKYT |
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