Gene
Gene Model ID | habu1_s3002_g10676 |
---|---|
Locus | habu1_scaffold3002 : 536958 ... 542931 : + |
To GenomeBrowser | habu1_scaffold3002:536958..542931 |
Genes list of scaffold | habu1_scaffold3002 |
Annotation by Blast2GO
Annotation | GO |
---|---|
39s ribosomal protein mitochondrial | EC:3.1.26.3 GO:0004525 GO:0005739 GO:0005840 GO:0006396 GO:0044822 GO:0051252 GO:0070125 GO:0090502 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
habu1_s3002_g10676.t1 | 1 | 1 | dsrm | 233 | 296 | 1.4e-06 | 28.7 | 6.7e-10 | 3.3e-06 | 27.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
habu1_s3002_g10676.t1 | gi|602627124|ref|XP_007420511.1| | PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Python bivittatus] | 0.0 |
habu1_s3002_g10676.t1 | gi|637277010|ref|XP_008104456.1| | PREDICTED: 39S ribosomal protein L44, mitochondrial [Anolis carolinensis] | 0.0 |
habu1_s3002_g10676.t1 | gi|530577385|ref|XP_005282644.1| | PREDICTED: 39S ribosomal protein L44, mitochondrial [Chrysemys picta bellii] | 0.0 |
habu1_s3002_g10676.t1 | gi|558147712|ref|XP_006119951.1| | PREDICTED: 39S ribosomal protein L44, mitochondrial-like isoform X1 [Pelodiscus sinensis] | 0.0 |
habu1_s3002_g10676.t1 | gi|527257677|ref|XP_005147105.1| | PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Melopsittacus undulatus] | 0.0 |
Expression profile
Libraries | FPKM |
---|---|
>Adult | |
Venom fang forming tissue | 6.6 |
Venom grand-1 | 7.3 |
Pit, infrared sensing | 7.3 |
Nose | 8.1 |
Brain-1 | 5.0 |
Eye | 11.2 |
fetal fibroblast | 21.1 |
venom gland-2 | 15.7 |
Brain-2 | 5.7 |
Spleen | 5.5 |
Lung | 6.1 |
Liver | 16.1 |
Kidney | 11.9 |
Pancreas | 12.0 |
Small intestine | 7.0 |
Large intestine | 7.5 |
Stomach | 7.3 |
heart | 14.2 |
ovary | 115.4 |
cheek muscle | 15.1 |
Transcript
Transcript ID | habu1_s3002_g10676.t1 |
---|---|
Definition | - |
>habu1_s3002_g10676.t1 acggaccagaaaggaaatgacacgagtttccagccggcgctaaatcaaggttccccgggtacgatggcgtcgatgctctt acgcccgttgcttctccagacttctcagcggttgttcgcggcggcgaatggagccgccttgcttggttctcagccgcgcc gaaacaaaaagctctggctccaagcttatctggagcagcagcgtttgcttgagccccccaggcgccggtctgagaagcct aactgggattaccatgcagaaatagaagcttttggccatcggatacacgagacattcccactggaccaactcaaaactgc gtttgttaacctctgctatataaaaaatgaagaatctaaacgccaagaacttggactaaaaaaagtagaccttgctctta atctcaaggacaatcaggaactttctttacagggagcttccttttcgcactcttacctcacacagtgctttgaagaagcc tttccaaaaatgccacctgctggcattgaagctcttgttaactatctcaccagtgaagaaatagtatcctacattgctac aaacctatctttgcaagacttgacactttgtgcagaatttcctgtgccacctaaggtgctgcaggagactctttttgctg taataggagctttgcttcaagataacagctctcaaagaacagagatctttatcagagacttcttcatccctcagttgata ggaaaggaactatttgagatgtggaacattgtaaaccccatgggcttgctgctggaagaactggccaaaaggaatataac tgctccagaaccaaggctaaccaggcagtcaggagctaccactgctttgcccttgttctttgttgggttatattgtgata agaagcttctagctgaaggtactggtgaaacagtattagctgctgaagaagaggctgctcgtgtggccttgcggaaactt tatggattcactgagaacagacaaccctggcattacccttctttgaaatgcgagaagaaagctgaaaaagctattagcag tagttaggcaaaaaaaaaatcaggtcatttgcaacaatactgtatttcaggaagaacttttttccttctcttccattaga tttatctaaattagaatgctttgaataaaagtgatctatcaaacgattcat |
Protein
Protein ID | habu1_s3002_g10676.t1 |
---|---|
Definition | - |
>habu1_s3002_g10676.t1 MLLRPLLLQTSQRLFAAANGAALLGSQPRRNKKLWLQAYLEQQRLLEPPRRRSEKPNWDYHAEIEAFGHRIHETFPLDQL KTAFVNLCYIKNEESKRQELGLKKVDLALNLKDNQELSLQGASFSHSYLTQCFEEAFPKMPPAGIEALVNYLTSEEIVSY IATNLSLQDLTLCAEFPVPPKVLQETLFAVIGALLQDNSSQRTEIFIRDFFIPQLIGKELFEMWNIVNPMGLLLEELAKR NITAPEPRLTRQSGATTALPLFFVGLYCDKKLLAEGTGETVLAAEEEAARVALRKLYGFTENRQPWHYPSLKCEKKAEKA ISSS |