Gene
| Gene Model ID | habu1_s3012_g10715 |
|---|---|
| Locus | habu1_scaffold3012 : 17976 ... 23240 : + |
| To GenomeBrowser | habu1_scaffold3012:17976..23240 |
| Genes list of scaffold | habu1_scaffold3012 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin beta-2b chain | GO:0001764 GO:0003924 GO:0005200 GO:0005515 GO:0005525 GO:0005634 GO:0005737 GO:0005874 GO:0007017 GO:0051084 GO:0051258 GO:0055085 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s3012_g10715.t1 | 1 | 1 | Misat_Tub_SegII | 2 | 71 | 3.6e-06 | 27.0 | 2.2e-09 | 8.3e-06 | 25.8 |
| habu1_s3012_g10715.t1 | 1 | 1 | Tubulin | 3 | 222 | 0.0 | 238.8 | 0.0 | 0.0 | 238.2 |
| habu1_s3012_g10715.t1 | 1 | 1 | Tubulin_C | 261 | 382 | 0.0 | 171.2 | 0.0 | 0.0 | 170.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s3012_g10715.t1 | gi|52138699|ref|NP_001004400.1| | tubulin beta-2 chain [Gallus gallus] | 0.0 |
| habu1_s3012_g10715.t1 | gi|363730444|ref|XP_001231210.2| | PREDICTED: tubulin beta-1 chain-like isoform X1 [Gallus gallus] | 0.0 |
| habu1_s3012_g10715.t1 | gi|729750037|ref|XP_010571579.1| | PREDICTED: tubulin beta-2 chain isoform X1 [Haliaeetus leucocephalus] | 0.0 |
| habu1_s3012_g10715.t1 | gi|449492350|ref|XP_004175569.1| | PREDICTED: tubulin beta-1 chain [Taeniopygia guttata] | 0.0 |
| habu1_s3012_g10715.t1 | gi|696959512|ref|XP_009567526.1| | PREDICTED: tubulin beta-1 chain isoform X1 [Cuculus canorus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 30.3 |
| Venom grand-1 | 19.6 |
| Pit, infrared sensing | 43.4 |
| Nose | 64.4 |
| Brain-1 | 120.7 |
| Eye | 39.7 |
| fetal fibroblast | 159.6 |
| venom gland-2 | 9.5 |
| Brain-2 | 179.3 |
| Spleen | 9.0 |
| Lung | 35.3 |
| Liver | 3.7 |
| Kidney | 617.9 |
| Pancreas | 7.8 |
| Small intestine | 4.7 |
| Large intestine | 17.9 |
| Stomach | 7.7 |
| heart | 6.2 |
| ovary | 47.5 |
| cheek muscle | 11.9 |
Transcript
| Transcript ID | habu1_s3012_g10715.t1 |
|---|---|
| Definition | - |
>habu1_s3012_g10715.t1 tcgcaggttgccggtaagagaggaggtggggtaaggcaggaggctgaagcagcggccagtgaggtgggggggtgcgagcc cagaagaaagccgtcgccatgcgtgagatcgtgcacatccaagccggccagtgcgggaaccagatcggagccaagttctg ggaggtcatcagcgatgagcatggcattgaccccaccggcagctaccatggagacagcgacctgcagctggagaggatca atgtctactacaatgaagcaactggtaacaagtatgttccccgtgcaattctcgttgacctggagcctggcacaatggac tcagtcagatctggaccttttggccagatctttaggcctgataattttgtctttggccagagtggtgctgggaacaactg ggccaaaggccactacacagagggagctgagctagtggattcggtgctggatgtagtaaggaaggagtctgaaagctgtg attgcttacagggcttccaactcacccactcgttgggtgggggcactggatctggcatgggaacgcttctcatcagcaag attagggaggaatatcctgataggatcatgaacaccttcagtgtaatgccatctccaaaagtgtcagacacagtggtgga gccatacaatgccaccctctctgttcaccagttggtagagaacacagatgaaacctactgtattgacaatgaggctctgt atgacatctgcttccgcacattgaaactcacaactccaacctacggcgatctcaaccacttggtatctgccaccatgagc ggagtgaccacctgcctccggttccctggccaactgaatgcagaccttcgcaagctggcagtcaacatggtgcctttccc tcgcctgcacttcttcatgcccggctttgctcccttgacgagtcgtggcagccaacaatatcgtgccctgacggtccctg agctgactcaacagatgtttgattccaaaaacatgatggcggcctgtgacccccgccacggccggtacctgacggtggca gccatcttccggggccgaatgtccatgaaggaggtggatgagcagatgctgaacgtccagaacaagaacagcagctactt tgtggaatggatccctaacaacgtgaagacggccgtgtgtgacattcctccccgaggcctgaagatgtctgccaccttca tcggcaacagcaccgcaatccaggagctcttcaagagaatctctgagcagttcacagccatgttccggcggaaggctttc ttgcactggtacaccggcgaaggcatggatgagatggagttcacggaagccgagagcaacatgaatgaccttgtctccga gtaccagcagtatcaagatgccactgcagacgagcaaggggagtttgaggaggaaggagaggaggacgaggcttagaggt tttgagtagggttagtccataggcaagtgtccaagtgtggactgtcagtaaaaaaaaagtgtggatattgttcattaaag attttgtagttttatttctcc |
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Protein
| Protein ID | habu1_s3012_g10715.t1 |
|---|---|
| Definition | - |
>habu1_s3012_g10715.t1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEGEEDEA |
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